Gene Pput_4291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4291 
Symbol 
ID5191318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4800483 
End bp4801916 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content62% 
IMG OID640588768 
Productprotease Do 
Protein accessionYP_001269599 
Protein GI148549497 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATAC CACGCTTGAA ATCCTACCTA ATGATGTTCG CTGCTGTGCT GATGCTCGGC 
CAAGTCCTCA CCGCCCAGGC CGAGGAAGCC CTGCCGGACT TCACCACCTT GGTGGAGCAG
GCTTCGCCGG CGGTGGTCAA CATCAGTACC AAGCAGAAGC TGCCTGACCG CCGAATCGCC
GCAGGCCAGA TGCCGGACCT GGAAGGCCTG CCGCCGATGT TCCGCGAGTT CTTCGAGCGC
AACATGCCCC AGCAGCCGCG CTCGCCGCGC GGCGACCGCC AGCGCGAGGC GCAGTCGCTG
GGCTCGGGTT TCATCATCTC CAGTGATGGC TACGTGCTCA CCAATAACCA TGTGGTGGCC
GATGCCGACG AGATCATCGT CCGCCTGTCG GACCGTAGCG AGCTGCAGGC CAAGCTGGTG
GGTACCGACC CGCGTACTGA CGTGGCGCTG CTGAAGGTCG ATGGCAAGAA TTTGCCAACG
GTGAAACTGG GTGACTCCGA GAAGCTCAAG GTGGGCGAGT GGGTACTGGC CATCGGTTCG
CCGTTCGGCT TCGACCATTC GGTGACCAAA GGTATCGTCA GCGCCAAGGG CCGGACCCTG
CCCAATGACA CCTACGTACC GTTCATCCAG ACCGACGTGG CCATCAACCC GGGTAACTCC
GGCGGCCCCC TGTTCAACAT GAAAGGCGAA GTGGTGGGTA TCAACTCGCA GATCTTCACC
CGTTCTGGCG GTTTCATGGG GCTGTCGTTC GCCATCCCGA TTGACGTGGC GATTGATGTC
TCCAACCAGC TGAAGAAAGA CGGCAAGGTC AGCCGCGGCT GGCTGGGCGT AGTGATTCAG
GAGGTCAACA AGGACCTGGC TGAATCGTTC GGCCTGGACA AACCGGCGGG CGCCCTGGTG
GCCCAGGTGC TGGAAAACGG CCCGGCAGCC AAAGGCGGCC TGCAGGTGGG CGACGTGATC
CTCAGCATGA ACGGCCAGCC AATCGTCATG TCGGCCGATC TGCCGCACCT GGTTGGCGGC
CTCAAGGATG GCGAGAAGGC CAAGCTGGAA ATCATCCGCA ATGGCAAGCG CCAGAACCTG
GACATCAGCG TCGGCGCGCT GCCGGATGAC GACGTTGAGA TTGGCGCTGG CACCGAAGGC
GGCGCCGAGC GCAGCAGCAA CCGCCTGGGT GTATCGGTCG CCGACCTGAC CGCCGAGCAG
AAAAAGTCCC TGGAGCTCAA AGGTGGCGTG GTCATCAAGG AAGTGCAGGA TGGCCCGGCA
GCCATGATCG GCTTGCGCCC GGGTGATGTC ATCAGCCATC TGAACAACCA GGCTATCGGT
TCGGCGAAGG AATTCACCGA AATCGCCAAG GAACTGCCGA AGAACCGATC TGTGTCGATG
CGCGTGCTGC GTCAGGGCCG CGCCAGCTTC ATCACCTTCA AGCTTGCTGA ATAA
 
Protein sequence
MSIPRLKSYL MMFAAVLMLG QVLTAQAEEA LPDFTTLVEQ ASPAVVNIST KQKLPDRRIA 
AGQMPDLEGL PPMFREFFER NMPQQPRSPR GDRQREAQSL GSGFIISSDG YVLTNNHVVA
DADEIIVRLS DRSELQAKLV GTDPRTDVAL LKVDGKNLPT VKLGDSEKLK VGEWVLAIGS
PFGFDHSVTK GIVSAKGRTL PNDTYVPFIQ TDVAINPGNS GGPLFNMKGE VVGINSQIFT
RSGGFMGLSF AIPIDVAIDV SNQLKKDGKV SRGWLGVVIQ EVNKDLAESF GLDKPAGALV
AQVLENGPAA KGGLQVGDVI LSMNGQPIVM SADLPHLVGG LKDGEKAKLE IIRNGKRQNL
DISVGALPDD DVEIGAGTEG GAERSSNRLG VSVADLTAEQ KKSLELKGGV VIKEVQDGPA
AMIGLRPGDV ISHLNNQAIG SAKEFTEIAK ELPKNRSVSM RVLRQGRASF ITFKLAE