| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4277 |
|---|
| Symbol | |
|---|
| ID | 5194528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4783808 |
|---|
| End bp | 4786219 |
|---|
| Gene Length | 2412 bp |
|---|
| Protein Length | 803 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640588754 |
|---|
| Product | Pyrrolo-quinoline quinone |
|---|
| Protein accession | YP_001269585 |
|---|
| Protein GI | 148549483 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.561877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTG AAGGTGCGAA CCAAGGAAGC CGCTGGCTAC CGCGCCTGAT TGGCGCGCTG
CTGTTGCTGA TGGGCCTGGC CCTGCTGGCC GGCGGTATCA AGCTGAGCCA GCTGGGCGGA
TCGCTGTACT ACCTGATCGC CGGTATCGGC TTTGCCCTTT CGGGCATCCT GCTGCTGGCC
CAACGCCAGA TCGCCCTTGG CCTGTATGGC CTGGTGCTGC TGGGCAGCAC CGTTTGGGCC
CTGCTCGAAG TGGGCCTGGA CTGGTGGCAA CTGGTACCCC GTCTGGCCAT CTGGTTCGCC
ATCGGCGTGG TGCTGCTGCT TCCGTGGGCA CGTCGCCCGC TGATCGGCCC GGCCAGCAAA
GCCAATACTG CACTGCTCGG CCTGGCAGTG GTCGCTTCGG GCGCTTGCGC GCTGGGCAGC
CAGTTCACCC ATCCCGGTGA AGTGTTCGGC GAACTGGGCC GCGACAGCAG CGAAATGGCC
AGTGCCGCCC CGACCATGCC CGACGGCGAA TGGCAGGCCT ACGGCCGTAC CGAGCATGGC
GACCGCTACT CGCCGCTGCA CCAGATCACC CCGCAGAACG CCTACCGCCT GGAAGAGGCC
TGGCGCATTC GCACCGGTGA TCTGCCAACC GAAAACGACC CGGTGGAGCT GACCAACCAG
AACACCCCGC TGAAGGTCAA CGGCATGCTC TACGCCTGCA CCGCGCACAG CCGCCTGCTG
GCGCTGGACC CGGACACTGG CGCGGAAATC TGGCGCTACG ACCCGCAGGT CAAGAGCCCG
ACCGGCACCT TCAAAGGCTT TGCCCACATG ACGTGCCGTG GCGTCTCGTA CTATGACGAA
AACCGCTACG TCAGCCGCGA CGGCAGCCCG GCGCCGAAAA TTACCGACGC AGGCCAGGCC
GTGGCCCAAG CCTGCCCACG TCGCCTCTAC CTGCCGACTG CAGATGCCCG CCTGATCGCC
ATCAACGCCG ACAACGGCAA GGTCTGCGAA GGCTTCGCCA ACCAGGGCGT GATCGACCTC
ACCACCGGCA TCGGCCCGTT CACCGCCGGC GGCTATTACT CCACCTCGCC TGCTGCGATT
ACCCGTGACC TGGTGATCAT CGGTGGCCAC GTCACCGACA ACGAGTCGAC CAATGAGCCG
TCCGGGGTGA TCCGCGCCTA CGACGTGCAC GACGGCCACC TGGTGTGGAA CTGGGACAGC
AACAACCCGG ACGACACCAA GCCATTGGCT GCCGGCAAAA TGTATAGCCG CAACTCGGCC
AACATGTGGT CAATCGCCAG CGTCGACGAA GACCTTGGCA TGATCTACCT GCCGCTGGGC
AACCAGACCC CGGACCAGTG GGGCGCCGAC CGCACCCCAG GCGCCGAGAA GTACAGTGCC
GGCGTGGTCG CCCTTGACCT GGCCACCGGC AAGGCACGCT GGAACTATCA GTTCACCCAT
CACGACCTGT GGGACATGGA CGTCGGCAGC CAGCCGACAC TGGTACACCT GAAAACCGAC
GATGGCGTGA AACCGGCGAT CATCGTACCG ACCAAGCAAG GCAGCCTGTA CGTGCTCGAC
CGCCGCGACG GTACGCCAAT CGTGCCGATC CGCGAGATCC CCACCCCACA AGGCGCAGTG
GAAGGCGACC ACACCTCGCC AACCCAGGCT CGTTCCGACC TCAACCTGCT CGGCCCAGAG
CTGACCGAAC AGGCCATGTG GGGCGCCACG CCTTTCGACC AGATGCTGTG CCGCATCCAG
TTCCGCGAGC TGCGCTACGA AGGCCAGTAC ACCCCGCCAT CCGAACAAGG TTCGTTGGTC
TACCCCGGCA ACGTAGGTGT ATTCAACTGG GGCAGCGTGT CGGTCGACCC GGTGCGCCAG
TTGCTGTTCA CTTCGCCCAA CTACATGGCG TTCGTGTCGA AGATGGTCCC GCGTGAGCAG
GTTGCCGAAG GCAGCAAGCG CGAAAGCGAG ACCAGCGGCG TGCAGCCGAA CACCGGTGCA
CCGTATGCAG TGACCATGCA CCCGTTCATG TCGCCGCTCG GCGTACCGTG CCAGGCACCC
GCCTGGGGCT ACGTCGCCGC CATCGACCTG TTCACCAACA AGGTGGTGTG GAAACACAAG
AACGGCACCA CCCGGGACAG CACTCCGGTG CCGATCGGCC TGCCGGTTGG CGTGCCAAGC
ATGGGTGGCT CGATCGTCAC CGCCGGTGGC GTCGGTTTCC TCAGCGGCAC GCTCGACCAG
TACCTGCGCG CCTATGACGT GAACAACGGC AAGGAATTGT GGAAGGCACG CCTGCCAGCG
GGTGGCCAGG CTACGCCGAT GAGCTACACC GGCAAGGACG GCAAGCAGTA CGTGCTGGTG
ACTGCCGGCG GCCATGGCTC GCTGGGCACC AAGATGGGCG ATTACATCAT CGCTTACAAA
TTAGCTGAGT AA
|
|---|
| Protein sequence | MSTEGANQGS RWLPRLIGAL LLLMGLALLA GGIKLSQLGG SLYYLIAGIG FALSGILLLA
QRQIALGLYG LVLLGSTVWA LLEVGLDWWQ LVPRLAIWFA IGVVLLLPWA RRPLIGPASK
ANTALLGLAV VASGACALGS QFTHPGEVFG ELGRDSSEMA SAAPTMPDGE WQAYGRTEHG
DRYSPLHQIT PQNAYRLEEA WRIRTGDLPT ENDPVELTNQ NTPLKVNGML YACTAHSRLL
ALDPDTGAEI WRYDPQVKSP TGTFKGFAHM TCRGVSYYDE NRYVSRDGSP APKITDAGQA
VAQACPRRLY LPTADARLIA INADNGKVCE GFANQGVIDL TTGIGPFTAG GYYSTSPAAI
TRDLVIIGGH VTDNESTNEP SGVIRAYDVH DGHLVWNWDS NNPDDTKPLA AGKMYSRNSA
NMWSIASVDE DLGMIYLPLG NQTPDQWGAD RTPGAEKYSA GVVALDLATG KARWNYQFTH
HDLWDMDVGS QPTLVHLKTD DGVKPAIIVP TKQGSLYVLD RRDGTPIVPI REIPTPQGAV
EGDHTSPTQA RSDLNLLGPE LTEQAMWGAT PFDQMLCRIQ FRELRYEGQY TPPSEQGSLV
YPGNVGVFNW GSVSVDPVRQ LLFTSPNYMA FVSKMVPREQ VAEGSKRESE TSGVQPNTGA
PYAVTMHPFM SPLGVPCQAP AWGYVAAIDL FTNKVVWKHK NGTTRDSTPV PIGLPVGVPS
MGGSIVTAGG VGFLSGTLDQ YLRAYDVNNG KELWKARLPA GGQATPMSYT GKDGKQYVLV
TAGGHGSLGT KMGDYIIAYK LAE
|
|---|
| |