| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4253 |
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| Symbol | xerD |
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| ID | 5191344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4757070 |
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| End bp | 4757966 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588730 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_001269561 |
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| Protein GI | 148549459 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCC TCGACCACCC CCTGATCGAC CAGTTCCTTG ACGCCCTATG GCTGGAAAAA
GGCCTGTCCG ACAACACCCG CGTGTCCTAC CGCAGCGACC TGGCCCTGTT CAATGGCTGG
CTGCAGGAGC ATTCGGTATC GCTGCCAGAC GCCGGCCGCG ACCTGATCCT CGATCACCTG
GCCTGGCGCC TGGATCAGGG CTACAAGCCA CGTTCCACGG CGCGTTTCCT CTCCGGCCTG
CGCGGCTTTT TCCGTTACCT GCTGCGGGAA AAGCTGGTGG CCATCGACCC GACCCTGCAG
GTCGACATGC CGCAATTGGG CAAGCCGCTA CCCAAGTCGC TGTCCGAAGC CGACGTCGAA
GCCCTGTTGC AGGCTCCGGA CCTGGGCGAA GCCATTGGCC AACGCGACCG TGCCATGCTC
GAAGTGCTCT ACGCGTGCGG CCTTCGGGTT ACCGAACTGG TCAGCCTGAC CCTCGACCAG
GTCAACCTGC GCCAGGGTGT GCTGCGGGTG ATGGGCAAGG GCAGCAAGGA GCGCCTGGTG
CCCATGGGTG AAGAGGCGGT GGTGTGGTTG GAGCGCTACC AGCGCGATGG TCGCGCCGAA
CTGCTCAATG GCCGACCCAG CGACGTGCTG TTCCCCAGTC AGCGCGGCGA GCAGATGACG
CGCCAGACCT TCTGGCACCG TATCAAACAC CACGCACGGG TTGCCGGCAT CGACAAGCCG
CTGTCGCCGC ACACCCTGCG GCATGCCTTC GCCACCCACC TGCTCAACCA CGGTGCCGAC
TTGCGGGTGG TGCAGATGCT GCTGGGCCAC AGTGACCTGT CGACCACGCA GATCTATACC
CACGTCGCCA AGGCCCGCCT GCAGCAGTTG CACGCCCAGC ACCACCCGCG TGGATGA
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| Protein sequence | MPALDHPLID QFLDALWLEK GLSDNTRVSY RSDLALFNGW LQEHSVSLPD AGRDLILDHL
AWRLDQGYKP RSTARFLSGL RGFFRYLLRE KLVAIDPTLQ VDMPQLGKPL PKSLSEADVE
ALLQAPDLGE AIGQRDRAML EVLYACGLRV TELVSLTLDQ VNLRQGVLRV MGKGSKERLV
PMGEEAVVWL ERYQRDGRAE LLNGRPSDVL FPSQRGEQMT RQTFWHRIKH HARVAGIDKP
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HVAKARLQQL HAQHHPRG
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