Gene Pput_4178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4178 
Symbol 
ID5191253 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4675634 
End bp4677994 
Gene Length2361 bp 
Protein Length786 aa 
Translation table11 
GC content61% 
IMG OID640588655 
Productsurface antigen (D15) 
Protein accessionYP_001269486 
Protein GI148549384 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4775] Outer membrane protein/protective antigen OMA87 
TIGRFAM ID[TIGR03303] outer membrane protein assembly complex, YaeT protein 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.39317 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGTC TGCTGCTAAC TGCGGTCATG TCCGCACTGA TGATCGCTGA AGTTCACGCC 
GAGTCCTTCA CCATCTCCGA TATTCGCGTC AACGGCCTGC AGCGGGTTTC CGCTGGCAGT
GTGTTCGGTG CCTTGCCGCT GAACGTTGGC GACCAGGCCG ACGACCGCCG CCTGGTGGAC
TCGACTCGTT CCTTGTTCAA GACCGGGTTC TTCCAGGACA TCCAGTTGAG CCGCGATGGC
AATGTGCTGA TCATCAACGT GGTCGAGCGC CCGTCGGTGT CGAGCATCGA GATTGAAGGC
AACAAGGCGA TCAGCACCGA AGACCTGATG AAGGGCCTGA AACAATCGGG CCTGGCCGAA
GGTGAGATCT TCCAGCGTGC CACCCTCGAA GGTGTGCGTA ATGAGCTGCA GCGCCAGTAC
GTGGCCCAAG GGCGCTACTC GGCCGAGGTC GACGCCGAGG TGGTGCCGCA GCCGCGCAAC
CGTGTGGCGC TGAAGATCAA GATCAACGAA GGCACCGTCG CCGCCATCCA GCACATCAAC
ATCGTGGGCA ACAACGTATT CGATGATGAG ACCCTGGGGC AGCTGTTCGA GCTGAAGACC
ACCAACTGGC TGTCGTTCTT CAAGAACGAC GACAAGTACG CCCGTGAAAA ACTCTCCGGT
GACCTGGAGC GCCTGCGTTC CTACTACCTG GACCGCGGCT ACATCAACAT GGACATCGCC
TCCACCCAGG TGTCCATCAC GCCGGACAAG AAGCACGTCT ACATCACCGT CAACATCAAC
GAAGGCGAGA AATACACCGT TCGCGACGTG AAGCTGTCCG GTGACCTCAA GGTGCCGGAA
GACCAGGTCA AGTCGCTGCT GCTGGTGCAG CCGGGCCAGG TGTTCTCGCG CAAGGTGATG
ACCACCACGT CCGAGCTGAT CACCCGCCGC CTGGGTAACG AAGGCTACAC CTTCGCCAAC
GTCAACGGCG TGCCGCAACC AAACGACCAG GACCACACCG TCGACATCAT GTTCGTGGTC
GACCCGGGCA AGCGTGCCTA CGTCAACCGC ATCAACTACC GCGGCAACAC CAAGACCGAA
GACGAAGTGC TGCGTCGCGA AATGCGCCAG ATGGAAGGTG GCTGGGCGTC GACCTACCTG
ATCGACCAGT CCAAGACCCG TCTTGAGCGC CTGGGCTTCT TCAAGGAAGT CAACGTCGAG
ACCCCGCAGG TGCCTGGCAC CGACGACCAG GTCGACGTCA ACTACAGCGT CGAAGAGCAG
GCCTCCGGCT CGATCACCGC CAGCGTCGGT TTCGCCCAGA GCGCCGGCCT GATCCTGGGG
GGGTCGATCA GCCAGAGCAA CTTCCTCGGT ACCGGTAACA AGGTATCCAT CGGCCTGACC
CGTTCGGAAT ACCAGACCCG TTACAACTTC GGCTTCGTTG ATCCCTACTT CACCGCCGAT
GGCGTCAGCC TGGGCTACAA CGCCTTCTAC CGCAGCACCG ATTACGACGA CCTCGACGTC
GACGTTGCCA GCTATGCGGT GGACAGCTAC GGTGCCGGCG TCAGCCTGGG CTACCCGATC
AGCGAAACCT CGCGCCTGAC CTACGGCCTG AGCGTGCAGC AGGACAAGAT CAAGACCGGC
AAGTACACCG TTGACGAGAT CTTCGACTTC CTCGAGCAGG AAGGTGACAA CTTCCTGAAC
TTCAAGGCCT CGATCGGCTG GTCCGAGTCG ACCCTGAACA AAGGCGTACT GGCCACCCGT
GGTCACTCGC AAAGCCTGAC CCTGGAGTCC ACCGTTCCGG GCAGCGACCT GTCGTTCTTC
AAGCTTGACT ACCGTGGCCA GCTGTTCAAG CCGATCACCA GCGACTACAC CCTGCGCCTG
CATACCGAGC TGGGCTATGG TGATGGGTAC GGCAGCACCT CCGGCCTGCC GTTCTACGAG
AACTATTTCG CGGGTGGTTT CAACTCCGTC CGTGGCTTCA AGGACAGCAG CCTGGGCCCG
CGCAGTACCC CGAGCATCGG TGAGGCCGCA GGTGGCAAGC CAGGCACCAT CGCTGACCCG
GATCAGGATC CGTTGCCGTT TGGTGGTAAC GTGCTGGTGC AAGGCGGTGC CGAGCTGCTG
TTCCCGCTGC CGTTCGTCAA GGACCAGCGT TCACTGCGCA CTTCCGTGTT CTGGGACGTG
GGTAACGTGT TCGACACCAA TTGCGGCAAC AAACCTGATT GCGAGAAGGT CGGGTTCTCG
GGCATGGCCA GTTCGGTCGG CCTGGGCGTG ACCTGGATTA CCGCACTGGG CCCGTTGAGC
TTCAGCCTGG CAATGCCGGT CAAGAAGCCG GACGATGCCG ATACCCAGGT GTTCCAATTC
TCTCTGGGCC AGACCTTCTA A
 
Protein sequence
MKRLLLTAVM SALMIAEVHA ESFTISDIRV NGLQRVSAGS VFGALPLNVG DQADDRRLVD 
STRSLFKTGF FQDIQLSRDG NVLIINVVER PSVSSIEIEG NKAISTEDLM KGLKQSGLAE
GEIFQRATLE GVRNELQRQY VAQGRYSAEV DAEVVPQPRN RVALKIKINE GTVAAIQHIN
IVGNNVFDDE TLGQLFELKT TNWLSFFKND DKYAREKLSG DLERLRSYYL DRGYINMDIA
STQVSITPDK KHVYITVNIN EGEKYTVRDV KLSGDLKVPE DQVKSLLLVQ PGQVFSRKVM
TTTSELITRR LGNEGYTFAN VNGVPQPNDQ DHTVDIMFVV DPGKRAYVNR INYRGNTKTE
DEVLRREMRQ MEGGWASTYL IDQSKTRLER LGFFKEVNVE TPQVPGTDDQ VDVNYSVEEQ
ASGSITASVG FAQSAGLILG GSISQSNFLG TGNKVSIGLT RSEYQTRYNF GFVDPYFTAD
GVSLGYNAFY RSTDYDDLDV DVASYAVDSY GAGVSLGYPI SETSRLTYGL SVQQDKIKTG
KYTVDEIFDF LEQEGDNFLN FKASIGWSES TLNKGVLATR GHSQSLTLES TVPGSDLSFF
KLDYRGQLFK PITSDYTLRL HTELGYGDGY GSTSGLPFYE NYFAGGFNSV RGFKDSSLGP
RSTPSIGEAA GGKPGTIADP DQDPLPFGGN VLVQGGAELL FPLPFVKDQR SLRTSVFWDV
GNVFDTNCGN KPDCEKVGFS GMASSVGLGV TWITALGPLS FSLAMPVKKP DDADTQVFQF
SLGQTF