Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4178 |
Symbol | |
ID | 5191253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4675634 |
End bp | 4677994 |
Gene Length | 2361 bp |
Protein Length | 786 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640588655 |
Product | surface antigen (D15) |
Protein accession | YP_001269486 |
Protein GI | 148549384 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.39317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACGTC TGCTGCTAAC TGCGGTCATG TCCGCACTGA TGATCGCTGA AGTTCACGCC GAGTCCTTCA CCATCTCCGA TATTCGCGTC AACGGCCTGC AGCGGGTTTC CGCTGGCAGT GTGTTCGGTG CCTTGCCGCT GAACGTTGGC GACCAGGCCG ACGACCGCCG CCTGGTGGAC TCGACTCGTT CCTTGTTCAA GACCGGGTTC TTCCAGGACA TCCAGTTGAG CCGCGATGGC AATGTGCTGA TCATCAACGT GGTCGAGCGC CCGTCGGTGT CGAGCATCGA GATTGAAGGC AACAAGGCGA TCAGCACCGA AGACCTGATG AAGGGCCTGA AACAATCGGG CCTGGCCGAA GGTGAGATCT TCCAGCGTGC CACCCTCGAA GGTGTGCGTA ATGAGCTGCA GCGCCAGTAC GTGGCCCAAG GGCGCTACTC GGCCGAGGTC GACGCCGAGG TGGTGCCGCA GCCGCGCAAC CGTGTGGCGC TGAAGATCAA GATCAACGAA GGCACCGTCG CCGCCATCCA GCACATCAAC ATCGTGGGCA ACAACGTATT CGATGATGAG ACCCTGGGGC AGCTGTTCGA GCTGAAGACC ACCAACTGGC TGTCGTTCTT CAAGAACGAC GACAAGTACG CCCGTGAAAA ACTCTCCGGT GACCTGGAGC GCCTGCGTTC CTACTACCTG GACCGCGGCT ACATCAACAT GGACATCGCC TCCACCCAGG TGTCCATCAC GCCGGACAAG AAGCACGTCT ACATCACCGT CAACATCAAC GAAGGCGAGA AATACACCGT TCGCGACGTG AAGCTGTCCG GTGACCTCAA GGTGCCGGAA GACCAGGTCA AGTCGCTGCT GCTGGTGCAG CCGGGCCAGG TGTTCTCGCG CAAGGTGATG ACCACCACGT CCGAGCTGAT CACCCGCCGC CTGGGTAACG AAGGCTACAC CTTCGCCAAC GTCAACGGCG TGCCGCAACC AAACGACCAG GACCACACCG TCGACATCAT GTTCGTGGTC GACCCGGGCA AGCGTGCCTA CGTCAACCGC ATCAACTACC GCGGCAACAC CAAGACCGAA GACGAAGTGC TGCGTCGCGA AATGCGCCAG ATGGAAGGTG GCTGGGCGTC GACCTACCTG ATCGACCAGT CCAAGACCCG TCTTGAGCGC CTGGGCTTCT TCAAGGAAGT CAACGTCGAG ACCCCGCAGG TGCCTGGCAC CGACGACCAG GTCGACGTCA ACTACAGCGT CGAAGAGCAG GCCTCCGGCT CGATCACCGC CAGCGTCGGT TTCGCCCAGA GCGCCGGCCT GATCCTGGGG GGGTCGATCA GCCAGAGCAA CTTCCTCGGT ACCGGTAACA AGGTATCCAT CGGCCTGACC CGTTCGGAAT ACCAGACCCG TTACAACTTC GGCTTCGTTG ATCCCTACTT CACCGCCGAT GGCGTCAGCC TGGGCTACAA CGCCTTCTAC CGCAGCACCG ATTACGACGA CCTCGACGTC GACGTTGCCA GCTATGCGGT GGACAGCTAC GGTGCCGGCG TCAGCCTGGG CTACCCGATC AGCGAAACCT CGCGCCTGAC CTACGGCCTG AGCGTGCAGC AGGACAAGAT CAAGACCGGC AAGTACACCG TTGACGAGAT CTTCGACTTC CTCGAGCAGG AAGGTGACAA CTTCCTGAAC TTCAAGGCCT CGATCGGCTG GTCCGAGTCG ACCCTGAACA AAGGCGTACT GGCCACCCGT GGTCACTCGC AAAGCCTGAC CCTGGAGTCC ACCGTTCCGG GCAGCGACCT GTCGTTCTTC AAGCTTGACT ACCGTGGCCA GCTGTTCAAG CCGATCACCA GCGACTACAC CCTGCGCCTG CATACCGAGC TGGGCTATGG TGATGGGTAC GGCAGCACCT CCGGCCTGCC GTTCTACGAG AACTATTTCG CGGGTGGTTT CAACTCCGTC CGTGGCTTCA AGGACAGCAG CCTGGGCCCG CGCAGTACCC CGAGCATCGG TGAGGCCGCA GGTGGCAAGC CAGGCACCAT CGCTGACCCG GATCAGGATC CGTTGCCGTT TGGTGGTAAC GTGCTGGTGC AAGGCGGTGC CGAGCTGCTG TTCCCGCTGC CGTTCGTCAA GGACCAGCGT TCACTGCGCA CTTCCGTGTT CTGGGACGTG GGTAACGTGT TCGACACCAA TTGCGGCAAC AAACCTGATT GCGAGAAGGT CGGGTTCTCG GGCATGGCCA GTTCGGTCGG CCTGGGCGTG ACCTGGATTA CCGCACTGGG CCCGTTGAGC TTCAGCCTGG CAATGCCGGT CAAGAAGCCG GACGATGCCG ATACCCAGGT GTTCCAATTC TCTCTGGGCC AGACCTTCTA A
|
Protein sequence | MKRLLLTAVM SALMIAEVHA ESFTISDIRV NGLQRVSAGS VFGALPLNVG DQADDRRLVD STRSLFKTGF FQDIQLSRDG NVLIINVVER PSVSSIEIEG NKAISTEDLM KGLKQSGLAE GEIFQRATLE GVRNELQRQY VAQGRYSAEV DAEVVPQPRN RVALKIKINE GTVAAIQHIN IVGNNVFDDE TLGQLFELKT TNWLSFFKND DKYAREKLSG DLERLRSYYL DRGYINMDIA STQVSITPDK KHVYITVNIN EGEKYTVRDV KLSGDLKVPE DQVKSLLLVQ PGQVFSRKVM TTTSELITRR LGNEGYTFAN VNGVPQPNDQ DHTVDIMFVV DPGKRAYVNR INYRGNTKTE DEVLRREMRQ MEGGWASTYL IDQSKTRLER LGFFKEVNVE TPQVPGTDDQ VDVNYSVEEQ ASGSITASVG FAQSAGLILG GSISQSNFLG TGNKVSIGLT RSEYQTRYNF GFVDPYFTAD GVSLGYNAFY RSTDYDDLDV DVASYAVDSY GAGVSLGYPI SETSRLTYGL SVQQDKIKTG KYTVDEIFDF LEQEGDNFLN FKASIGWSES TLNKGVLATR GHSQSLTLES TVPGSDLSFF KLDYRGQLFK PITSDYTLRL HTELGYGDGY GSTSGLPFYE NYFAGGFNSV RGFKDSSLGP RSTPSIGEAA GGKPGTIADP DQDPLPFGGN VLVQGGAELL FPLPFVKDQR SLRTSVFWDV GNVFDTNCGN KPDCEKVGFS GMASSVGLGV TWITALGPLS FSLAMPVKKP DDADTQVFQF SLGQTF
|
| |