| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4158 |
|---|
| Symbol | truD |
|---|
| ID | 5193196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4654645 |
|---|
| End bp | 4655703 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640588635 |
|---|
| Product | tRNA pseudouridine synthase D |
|---|
| Protein accession | YP_001269466 |
|---|
| Protein GI | 148549364 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.082047 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC TGGAATTGCT GGGCCCGCGC GCATCGGGCG AACCCCTGGG CACCGCCGTC
CTCAAAGCGG TTGCCGAAGA CTTTCAGGTT GACGAAGTCC TGGATATACC GCTATCGGGC
CAAGGCGAGC ACCTGTGGCT GTGGGTCGAG AAGCGTGATC TGAACACTGA AGAAGCCGCC
CGGCGCCTTG CCCGCGCTGC TGGCGTGCCC GTGCGCAGCA TCAGCTATGC CGGCCTGAAG
GACCGCCAGG CGCTCACCCG CCAGTGGTTC AGCCTGCACC TGCCGGGCAA GGCCGATCCG
GATCTGTCGC GTGCCGAGGA TGCCAGCCTG CGTGTGCTCA AACAGGTGCG TCACCAGCGC
AAACTGCAGC GCGGCGCGCA TTCGGCCAAC GGGTTCACCT TGCGCCTGAC CGCCCTGGCT
GCCGATCACC AGGCGGTGGA TGCGCGCCTG GAGCAGCTCA GGCAGCAAGG TGTGCCCAAC
TACTTCGGCA CCCAGCGCTT TGGGCACGGT GGTGGCAACG TCCACGACGC CCTCGATTGG
GCCGCGCGCA AGGCTTTGCC TGAACAGCGC AACGTGCGTT CGCGGCTGCT TTCGGCCGGG
CGCAGCTACC TGTTCAATCA GTTGCTGGCT GCGCGTGTCG CTGACGGTAG CTGGGCCCGA
GCCCAGGTCG GGGACCTGCT GGCGTTCACC GACAGCCGCA GTTTCTTCCC GGCGGGTGAG
GCGGAATGTG CCGACCCGCG GCTGGCGATT CTCGACTTGC ATCCAACCGG CCCGATGTGG
GGGGAGGGCG CTTCACCTGC TGGCGCTGCG CCTGCCCAGC TGGAAAACGC TATCGGCGCA
CGTCAGCCGG CACTTTGCCA GTGGCTGGCC CAGGCGGGCA TGGATCACGA ACGGCGAATT
CTGCGGCTCC CTATTGGCGG CCTGACGTGG CATTATCCCG AGCCTGATAT CCTGCAACTG
GAATTCGTCC TGCCGGCCGG ATGCTTCGCC ACCGTGGTGG TGCGTGAAGT CGTGGATCTG
GTGTCGGCAG GGCAGACGGA CAGCCCATGC GTATTCTGA
|
|---|
| Protein sequence | MTELELLGPR ASGEPLGTAV LKAVAEDFQV DEVLDIPLSG QGEHLWLWVE KRDLNTEEAA
RRLARAAGVP VRSISYAGLK DRQALTRQWF SLHLPGKADP DLSRAEDASL RVLKQVRHQR
KLQRGAHSAN GFTLRLTALA ADHQAVDARL EQLRQQGVPN YFGTQRFGHG GGNVHDALDW
AARKALPEQR NVRSRLLSAG RSYLFNQLLA ARVADGSWAR AQVGDLLAFT DSRSFFPAGE
AECADPRLAI LDLHPTGPMW GEGASPAGAA PAQLENAIGA RQPALCQWLA QAGMDHERRI
LRLPIGGLTW HYPEPDILQL EFVLPAGCFA TVVVREVVDL VSAGQTDSPC VF
|
|---|
| |