| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4154 |
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| Symbol | |
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| ID | 5191103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4651023 |
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| End bp | 4652030 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640588631 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_001269462 |
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| Protein GI | 148549360 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.07893 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCTCA GTAAAGAAGT GCCGGAGTTT GACATCGACG ATGACGTCCT CCTAATGGAG
ACGGGTATCG TTTTGGAAAC GGATGTGGTG TCAGACGAAC CTGCTGTATC TTCGGTTCGG
ACGAGGGCCA AATCGGGCTC TTCGCTCAAG CAACACAAGT ACATCGATTA CAGCAGGGCG
CTCGATGCCA CCCAGCTGTA TCTCAACGAG ATCGGTTTCT CGCCGCTGCT TTCGCCGGAA
GAAGAAGTGC ATTTTGCGCG CTTGTCGCAA AAGGGTGACC CTGCCGGCCG CAAGCGCATG
ATCGAAAGCA ACCTGCGCCT GGTTGTCAAA ATTGCCCGTC GTTACGTGAA CCGTGGCCTG
TCGCTGCTCG ACCTGATCGA GGAGGGCAAC CTGGGGCTGA TCCGTGCGGT CGAAAAGTTC
GATCCGGAGC GTGGTTTCCG TTTTTCGACC TACGCGACCT GGTGGATTCG CCAGACCATC
GAACGGGCGA TCATGAACCA GACTCGCACC ATTCGCCTGC CGATCCACGT GGTCAAGGAA
CTGAACGTCT ACCTGCGCGC CGCGCGCGAG CTGACGCAGA AACTCGACCA CGAGCCCTCG
CCGGAAGAAA TCGCCACCTT GCTGGAAAAG CCGGTCGCCG AGGTCAAGCG CATGCTTGGC
CTGAACGAGC GGGTGTCTTC GGTAGACGTG TCGCTTGGCC CGGATTCGGA CAAGACGCTG
CTCGATACCC TGACCGACGA CCGCCCGACG GACCCGTGCG AACTGCTGCA GGATGACGAC
CTGTCGCAGA GCATCGATCA GTGGCTGGGC GAGTTGACCG ACAAGCAGCG TGAAGTGGTT
GTACGCCGCT TTGGCCTTCG CGGCCATGAA AGCAGTACCC TGGAGGATGT TGGGCTGGAG
ATCGGCCTTA CCCGTGAACG CGTGCGGCAA ATCCAGGTGG AAGGGCTCAA GCGCTTGCGC
GAGATCCTTG AAAAGAATGG TCTGTCCAGC GAGTCATTGT TCCAGTAG
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| Protein sequence | MALSKEVPEF DIDDDVLLME TGIVLETDVV SDEPAVSSVR TRAKSGSSLK QHKYIDYSRA
LDATQLYLNE IGFSPLLSPE EEVHFARLSQ KGDPAGRKRM IESNLRLVVK IARRYVNRGL
SLLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE
LNVYLRAARE LTQKLDHEPS PEEIATLLEK PVAEVKRMLG LNERVSSVDV SLGPDSDKTL
LDTLTDDRPT DPCELLQDDD LSQSIDQWLG ELTDKQREVV VRRFGLRGHE SSTLEDVGLE
IGLTRERVRQ IQVEGLKRLR EILEKNGLSS ESLFQ
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