| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4063 |
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| Symbol | rumA |
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| ID | 5194598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4580082 |
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| End bp | 4581440 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640588540 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001269371 |
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| Protein GI | 148549269 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.395804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGA AAAAAAGCAA CAGCGGCCTG CGCTTCCAGC CGGCCGGCGG CAATCGCACC
CCCCAGGTCC CAGTGGGCAA GAAGCAGCGC CTGGACATCG AGCGCCTGGC CGGTGACGGC
CGTGGCATTG CCTTCCTCGA CGGGCGTACC TGGTTCGTCA GTGGCGCCTT GGCCGGTGAG
GCCGTGGAGG CGCGGGTGCT CAACGCCCGT GGCAAAGTGG TCGAGGCACG CCTGGAGCGG
TTGCTGCAGG CGGCGCCCGA GCGCCGTGAG GCGCCATGTC GCTACTACGA CCGCTGCGGT
GGCTGCAACC TGCAGCACCT GCCGCACGAA GCGCAACTGG CGCTGAAGCA GCGCACCCTC
GCCGAGCAGT TGCAGCGGGT GGCCGGCGTG CAACCCGAGG CGTGGGCTGC CCCCCTGAGC
GGGCCGGAAT TCGGCTACCG GCGCCGCGCC CGTGTGGCCG TGCGCTGGGA CGTCAAGGCG
CGTCAGCTGG AGGTGGGTTT CCGCGCCGAA GCCAGCCAGG ACATCATTGC CATCGACGAT
TGTGCAGTGC TGGTACAACC CTTGCAGTCC ATTTTGCGCC ACTTGCCGAC GGTGCTGCGT
TCGTTGAGCA AGCCGCAGGC GCTGGGCCAT GTAGAGCTGT TCAGTGGCAC CGCCGAGGCG
GTTCTGGTGC GCCACGTCGC GCCGTTGCCG GCCGAGGACC AGGCCAGGTT GCAAGCGTTC
TGCGAGCAGG CCAACGCCCA GCTATGGCTG CAAGGCGAAG GTGAGCCGGC GCCCGTGGAC
CCAGCGGCGC AGTTGGGCTT CGCCCTGGCA CCTTGGCAGC TGGAGCTGGC CTGGCGCCCG
GGCGATTTCG TGCAGGTGAA TGCCCAGGTC AATACGGCGA TGATCGAGCA GGCTTTGGCC
TGGCTCGCGC CACAAGCCGA CGAGCGTGTG CTGGACTTGT TCTGCGGTCT GGGCAACTTT
GCCCTGCCGC TGGCCCGCCA GGCGCGTGAG GTGGTGGCAG TGGAAGGTGT ACAGGCCATG
GTCGATCGGG CCGCGGCCAA TGCCCGGAAC AACAATGTGC ATAACGCACG GTTTTTTCAG
GCCGATTTAT CGCAGCCTTT GGCAGGCACC GGATGGGCCG CCGAGGGCTT TTCTGCGGTA
CTCTTGGATC CACCGCGCGA CGGTGCTTTC GAGGTGGTGC AAGGCATCGC CCGCCTCAAG
GCCAGCAGGC TGGTCTACGT ATCGTGCAAC CCGGCCACGC TGGCGAGAGA CGCCCAAGTG
CTGGTCGGCC AGGGGTACCG GTTAAAAAGG GCCGGGATTC TCGACATGTT TCCTCAGACG
GCGCATGTCG AGGCCATGGC GTTATTCGAA GCGGGCTAG
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| Protein sequence | MSKKKSNSGL RFQPAGGNRT PQVPVGKKQR LDIERLAGDG RGIAFLDGRT WFVSGALAGE
AVEARVLNAR GKVVEARLER LLQAAPERRE APCRYYDRCG GCNLQHLPHE AQLALKQRTL
AEQLQRVAGV QPEAWAAPLS GPEFGYRRRA RVAVRWDVKA RQLEVGFRAE ASQDIIAIDD
CAVLVQPLQS ILRHLPTVLR SLSKPQALGH VELFSGTAEA VLVRHVAPLP AEDQARLQAF
CEQANAQLWL QGEGEPAPVD PAAQLGFALA PWQLELAWRP GDFVQVNAQV NTAMIEQALA
WLAPQADERV LDLFCGLGNF ALPLARQARE VVAVEGVQAM VDRAAANARN NNVHNARFFQ
ADLSQPLAGT GWAAEGFSAV LLDPPRDGAF EVVQGIARLK ASRLVYVSCN PATLARDAQV
LVGQGYRLKR AGILDMFPQT AHVEAMALFE AG
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