| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4057 |
|---|
| Symbol | |
|---|
| ID | 5191864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4571791 |
|---|
| End bp | 4574049 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640588534 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001269365 |
|---|
| Protein GI | 148549263 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.566614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG TACAAACCCA GAACATCGAA ACTGCCGATG TGATCGTAGT GGGCGCCGGC
ATGGCCGGCA GTGTCATGGC CTACCAGTTG GGCCTGGCCG GGTTGAAAGT GCTGGTGCTC
GAATCGGGCC CGGCCATTCC GCCCAATCGC AGCGAGTACC TGGAGCGTTT CTACACCGCG
GTGCTCAAGG CGCCCGAGTC GCCGTACCCA CCTGAGCAGA GCGAGCAGAC CCCGGCCACG
CAGTTCGCGC CACGGGCGAC CATCCAGGAC CTGATTACCG CGGGTAGCCA AGACCCGAAC
AAGGCGCAGA AAAGCTACCT GGTGCAGAAG GGGCCGCACC TGTTCGCCAG CACCTACGAG
CGGGTAGGCG GCGGCACCAT GTGGCACTGG ATGGGCACGG CCCTGCGCCT GTTGCCCAAC
GACTTTCGCA TGCGCACTGC GTACAACGTC GGGGTCGACT GGCCGCTCAG TTACGACGAC
CTGCAGACTG CCTACTGCCG CGCCGAGGAA GAGATGGGCG TGTCCGCGGA TGTCGCCTCG
CAGACTTACC TGGGCGTGAC CTTTCCGCAG GGCTACAAAT ACAGCATGCA TGGCATCCCG
CCGTCGCTGG TCGACCAAGG CCTGGGCAAG CACGTCACGG GCACCGTGTA CCAGAGCCCG
GAGAAGGGGC CCGACGGCAA GCCGTACCCA GGTGTCACCC TCAACGTCCG GCAGACCCCG
GCCGGGCGCA ACTCGCAGAA TGATAACGGC CGTCGGGTGT GTGCTGGCAA CACCAGCTGC
ACGCCGATCT GTCCGATCCA GGCCAAGTAC GACGCCACCG TGACCATGGC CAAGGCACTG
GATACCGGCA ACGTGCGCAT CCTCTACCAG ACCGTGGCGA GCCAGGTGCA GGTCGATGCC
AATGGGGTCA CGGGCATCGA TTTCATCCAG TACCAGAACA ACGGTACGCG CCAGAACGGC
ACGGCCCAGG GCAAACGCTA CGTGATCGCC GCCCACGCGA TCGAAACGCC GAAGTTGCTG
CTCAACTCCA TCGGCCCGAA CAGCCCTAAA GGGGTCGCCA ACAGCAGCGG CCAGGTCGGC
CAGGCGTTGG CTGACCACCC GGTGTACCTG GCCTGGGGCC TGATGCCTGA AGGCAAGCCG
CTGTTCCCGT TCCGGGGGCC GTTGTCCACC TCGGGGATTG AGGACATGCG CGATGGCCCG
TTCCGCAGCC AGCGTGCCGC CTGGCGTATC GAAATCGGCA ACGAGGGCTG GAACTGGTCG
GTGAATGACC CCTACACCTC GGTCTGCGAT TTCATCGACG GCACCAACCA CGGCGGCGCT
AACCCCAACA AGCTGGCGTT GTCCGGCCAG GCGCTGGTGC AGCAGCTCAA CAGCGTGCTG
ACCCGCCAGT TCCGTCTGGG CTTCTTGATC GAGCAGGTGG AAAAAGACCC CGACAAAGCG
CTGTGCCGGG TGGAGAGGAG CACGGAGTTC ACCGACGGCT TGGGCCTGCC TCGGCCGCAG
ATTACCTACG AACTGTCCGA CTACACCAAG GAGGGTTTCA AGCAGGCGCG CCTGGCCGCC
ACGCACATCA TCACCGAGCT GATGGGCGCT ACCGAGCTGA CCGACCTGAA CCCTAAGCTC
GAGCCCGGCT CGCAAACGGT GTTCGAGTAC GACGGCCAGA ACTACGCGTT CTACGGCGCT
GGTCACCTGA TGGGCACCTA CCGCATGGGC TCAGACCGCA CCACGTCGGT GGTGGACAAG
GACCAGCGCA GTTGGGACCA CCCCAACCTG TTCCTGGTCG GCGACGGCGT GTTCCCCACT
ACCGGCACCG CCAACCCGAC CTTGACCATT ACCGCGTTGA CGTTCCAGGC CGCCGACGTG
GTGGCCAGCG ACCTGCTCAA GCGCACTTTG CAGGTGCAGG CCAACCAGGC ATGGCAGGGC
ACGGGCATGC AGGTCAATGG GCAGAGCTGG CAGTTGGCGG TATGCACGGG CGGGCAGTGG
ACGGCGAACC CGGCCACCGG CATGGTTGGC GCGGCGGGCA ACCCAAGGTT GATCGCCAAG
CCCGGCTATG CCTTGCCTGG TCAACCGGAA GGGGCGTTGA TCGGGCGTAT CGGCAACAGC
GGTGCGCCGT TCCTGGTCGG CAACCAGGTG CAATTGCCGC GTGGCCAGCA AGGTGAGCTG
CAGTTGTGCA TCAATGACGA CCTGGACGGG CGTTACGGGG CTGGCCTGAG CGATAACCTG
GGCAGCCTGT CAGTAGAGGT GCGTTTCGGG GCGGTGTAG
|
|---|
| Protein sequence | MSNVQTQNIE TADVIVVGAG MAGSVMAYQL GLAGLKVLVL ESGPAIPPNR SEYLERFYTA
VLKAPESPYP PEQSEQTPAT QFAPRATIQD LITAGSQDPN KAQKSYLVQK GPHLFASTYE
RVGGGTMWHW MGTALRLLPN DFRMRTAYNV GVDWPLSYDD LQTAYCRAEE EMGVSADVAS
QTYLGVTFPQ GYKYSMHGIP PSLVDQGLGK HVTGTVYQSP EKGPDGKPYP GVTLNVRQTP
AGRNSQNDNG RRVCAGNTSC TPICPIQAKY DATVTMAKAL DTGNVRILYQ TVASQVQVDA
NGVTGIDFIQ YQNNGTRQNG TAQGKRYVIA AHAIETPKLL LNSIGPNSPK GVANSSGQVG
QALADHPVYL AWGLMPEGKP LFPFRGPLST SGIEDMRDGP FRSQRAAWRI EIGNEGWNWS
VNDPYTSVCD FIDGTNHGGA NPNKLALSGQ ALVQQLNSVL TRQFRLGFLI EQVEKDPDKA
LCRVERSTEF TDGLGLPRPQ ITYELSDYTK EGFKQARLAA THIITELMGA TELTDLNPKL
EPGSQTVFEY DGQNYAFYGA GHLMGTYRMG SDRTTSVVDK DQRSWDHPNL FLVGDGVFPT
TGTANPTLTI TALTFQAADV VASDLLKRTL QVQANQAWQG TGMQVNGQSW QLAVCTGGQW
TANPATGMVG AAGNPRLIAK PGYALPGQPE GALIGRIGNS GAPFLVGNQV QLPRGQQGEL
QLCINDDLDG RYGAGLSDNL GSLSVEVRFG AV
|
|---|
| |