| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4030 |
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| Symbol | |
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| ID | 5193255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4548239 |
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| End bp | 4549519 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640588507 |
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| Product | aromatic hydrocarbon degradation membrane protein |
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| Protein accession | YP_001269338 |
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| Protein GI | 148549236 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2067] Long-chain fatty acid transport protein |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0150189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG TAATGCTCAA AACCTCCCTC GGCGTAGCCG TTGCGCTTGC TTCCAGCCAA
CTGCTCGCCG CCGGGTTCGC GCTGAACGAA CAAAGTATCA GCGGTATGGG AACCGGTTTT
GCGGGGCGCT CGTCCTCTGC CGACGATGCC AGCACTGTGT ATGGCAACCC AGCCGGCATG
TCCCGCCTCA AGCGCGAACA ATTCACCGTG GGCGGCGCTG CCGTCATCGC CAAGACCGAC
ATATCGGGCC CAGGCAGCAA CTTCGGGGGG GAAACCGATG GTGACATGGT GCCTCTCGTT
GGCGTACCCA TGGGCTATTA CGTCAAGCCG ATTGATGATC ACTGGAGCGT TGGCTTCGGC
GTTTACGTGC CATACGGCCT GATCACCGAC TACGGTAGCG ATGACGCTGC ACGCTACTGG
GGCAAGAAGA GCAAGGTCGA GGTTGTCACC TTCCAGCCAA CCGTCAGCTA CGCCTTCAAC
GACAAAGTGT CGATCGGTTT TGGCCCGACC ATCAACCGTA TCAAGGGTGA ACTGGGTTCG
AACCTGAGCA GCAAGGCCCT CCTGGGGCCC AATGGCCCTG ATGGCGAGAC CAAGATCAAG
GGCGACGACA CTGCAATCGG TTACAACATC GGCGTTCTGG TGCAAGCTAC GGACCGTACC
CGTCTGGGCC TGACCTATCA CTCGATGGTC GACTACAAGC TTGAAGGCAA TACCCGCGTT
TCCTACCCGA TTCCACAGCT TGGCCTGAAC GGCAAGTTCG ACGCCAGCCT GAAAATCAAG
ACACCAGAGT CAGTGGACTT CTCGGTCACT CATGAACTGG ATGACCATTG GACACTGTAT
GCGGGTAGCA CCTGGACGCG CTGGAGCCGC CTGGAAAGCA TCGTCGTCGA GAACGAAGCG
CCGGCAGGCT ACCCGTTGAA GACCATCACC GAAGAGCAGA ACTGGCACGA CACCTGGGCC
CACGCCATTG GTGCGTCCTA CAAGGTGAAC AAGGAGTGGA CCCTGCGCGC AGGCTTCTCC
GTCGACCAGT CGCCCACCAA CAACCATGAT CGCTCGCCAC GCATTCCGAC TGGCGATCGT
AAAGCGGTCA GCTTTGGTGC CGGCTGGAGC CCGAACGATG ACATGACCAT CGACGTTGCC
TATTCGTATC TGTGGGAAGA GGATACCAAG GTCAACAACC TGCCAAGCTC GCAACAACAA
GGGCTGTTGA AAGGCAGCTA CCAAGCCAAG TACGAGAACA GCGCTCACGG TATCGGTGCA
TCCCTCACCT ACCGCTTCTG A
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| Protein sequence | MKKVMLKTSL GVAVALASSQ LLAAGFALNE QSISGMGTGF AGRSSSADDA STVYGNPAGM
SRLKREQFTV GGAAVIAKTD ISGPGSNFGG ETDGDMVPLV GVPMGYYVKP IDDHWSVGFG
VYVPYGLITD YGSDDAARYW GKKSKVEVVT FQPTVSYAFN DKVSIGFGPT INRIKGELGS
NLSSKALLGP NGPDGETKIK GDDTAIGYNI GVLVQATDRT RLGLTYHSMV DYKLEGNTRV
SYPIPQLGLN GKFDASLKIK TPESVDFSVT HELDDHWTLY AGSTWTRWSR LESIVVENEA
PAGYPLKTIT EEQNWHDTWA HAIGASYKVN KEWTLRAGFS VDQSPTNNHD RSPRIPTGDR
KAVSFGAGWS PNDDMTIDVA YSYLWEEDTK VNNLPSSQQQ GLLKGSYQAK YENSAHGIGA
SLTYRF
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