| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4001 |
|---|
| Symbol | |
|---|
| ID | 5193920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4510821 |
|---|
| End bp | 4511894 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640588474 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_001269309 |
|---|
| Protein GI | 148549207 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00838727 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.748991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTG CCGAACAGCT CAGTGCCTTG AGTGCCATCC TGGCTCAGCG CAGTATTCAA
AGTCTGTTCC AGCCCATCAT GTGCCTGAGC GAACATAGGG TGTTCGGCCA TGAGGCGCTG
AGCCGTGGCC CGTCCAACAG CCCGCTGCAT GCGCCACTCA ACCTGTTCAC CATCGCCCGC
CAGGCCGGCC GCCTGACCGA GCTGGAAGCC GCTTGCCGAG AAAGCGCCTG CCGACGCTTC
AGCGAGCAGC AACTGCAGGG CAAACTGTTT CTCAACATCT CACCCGAATC GCTGCTGGAG
CCGCACTACC CTTCCGGCCT GACCCTGAAA CTGCTCGAAC AGGTTGGCCT GCCGCCCAGC
CGGGTGGTGA TCGAGTTGAC CGAGCACACG CCCACCGACG ACTTCCAGCT GCTGTCCAAT
GCCGTGCACC ACTATCGCGA CATGGGCTTC TCGATTGCCA TCGACGACCT GGGCGCGGGC
TATTCCAGCC TGCGCCTGTG GTCGGAGCTG CGCCCCGAAT ACGTGAAGAT CGACCGGCAC
TTCATCGACG GCATCCATCG TGACCCGCTC AAGCGCGAGT TTGTAGGCTC TATCTTGCAG
ATTGCCCGGG CATCGAAGGC ACAGGTGATT GCCGAGGGCA TCGAGCTGGC GGAAGAGCTG
GCGGTGCTGG TGGAGATGGG CGTGGACCTG GTGCAGGGCT ATTTGCTAGG GCGGCCACAG
GAGCGAGGGG TACGCGACAG CGGGCTGCTA CCGGCACTGA CGCAGGTGCC ACTGGCTGAA
CAACCGACAG TGCGCTTGAA TGCCACGATC GGGCAGCTGC TGGAGCTGTT TGGCCGATAC
CAGCACCTGG AGGCATTGGA AGTGGTGGAT GCCGATGGCA GAGGGTGCGG ATTGATTCAC
AGGGATGCGC TGCCTGTGCC GGCCTCTTCG CGGGTGAACC CGCTCCTACA ACACCGACAG
GTGTCCACCC TCGATCAGGC GTGTAGGAGC GGGTTTACCC GCGAATACGG TAGCGGCGGC
AACGGTGAAC GGCGGGTGGA GATTGGCCAG CAGGCCCGGC CCTTTCGCGG GTGA
|
|---|
| Protein sequence | MTVAEQLSAL SAILAQRSIQ SLFQPIMCLS EHRVFGHEAL SRGPSNSPLH APLNLFTIAR
QAGRLTELEA ACRESACRRF SEQQLQGKLF LNISPESLLE PHYPSGLTLK LLEQVGLPPS
RVVIELTEHT PTDDFQLLSN AVHHYRDMGF SIAIDDLGAG YSSLRLWSEL RPEYVKIDRH
FIDGIHRDPL KREFVGSILQ IARASKAQVI AEGIELAEEL AVLVEMGVDL VQGYLLGRPQ
ERGVRDSGLL PALTQVPLAE QPTVRLNATI GQLLELFGRY QHLEALEVVD ADGRGCGLIH
RDALPVPASS RVNPLLQHRQ VSTLDQACRS GFTREYGSGG NGERRVEIGQ QARPFRG
|
|---|
| |