Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3996 |
Symbol | |
ID | 5192614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4504947 |
End bp | 4505741 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640588469 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001269304 |
Protein GI | 148549202 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0900077 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.096722 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCTG ACATCCGCTC CGGCGGCTGG TACCACCGCC TCGTGGTCTA CCTGCTGTTC CTGATCCTGC TGCTGCCCCT GGCCGGCACC CTGCTCTACT CGCTGGCCAC CAGCTGGTCG GCAAGCCTGC TGCCCAGTGG CCTGACCCTG AAGTGGTATG CGGCGCTGTG GAGCGAGCCG CGTTTCCTTG CCGCGTTCGG CCAGTCGCTG CTGGTGTGCG TAGGCGCACT GCTGCTGTCG GTGGTGCTGA TCTTGCCACT GCTGTTCGTG GTGCATTACC ACTTCCCGCG GCTCGACGCG CTGATGAACA TCCTCATCCT GCTGCCATTC GCGGTCCCGC CGGTGGTGTC GTCGGTGGGG CTGCTGCAGC TGTATGGCAG CGGGCCGATG GCCATGGTCG GCACACCGTG GATCCTGATC GGCTGCTACT TCACCATCGC CCTGCCGTTC ATGTACCGGG CCATCACCAA CAACCTGCAG GCCATCAACC TGCGCGACCT GATGGACGCT GCGCAGTTGC TCGGCGCCAG CACCTGGCAG GCCGCACTGC TGGTGGTGCT GCCGAACCTG CGCCAGGGCC TGATGGTGGC AGTGCTGCTG TCGTTCTCGT TCCTGTTCGG CGAATTCGTG TTTGCCAATC TGCTGGTCGG CACCCGCTAC GAGACCCTGC AGGTGTACCT GAACAACATG CGCAACAGCA GCGGCCACTT CAACAGCGCG CTGGTCATCT CCTACTTCGC CTTCGTGCTG GTACTGACCT GGGTCGCCAA CCGCCTGAAC AAGGACAAGA CCTGA
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Protein sequence | MRADIRSGGW YHRLVVYLLF LILLLPLAGT LLYSLATSWS ASLLPSGLTL KWYAALWSEP RFLAAFGQSL LVCVGALLLS VVLILPLLFV VHYHFPRLDA LMNILILLPF AVPPVVSSVG LLQLYGSGPM AMVGTPWILI GCYFTIALPF MYRAITNNLQ AINLRDLMDA AQLLGASTWQ AALLVVLPNL RQGLMVAVLL SFSFLFGEFV FANLLVGTRY ETLQVYLNNM RNSSGHFNSA LVISYFAFVL VLTWVANRLN KDKT
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