| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3991 |
|---|
| Symbol | |
|---|
| ID | 5194704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4498901 |
|---|
| End bp | 4501048 |
|---|
| Gene Length | 2148 bp |
|---|
| Protein Length | 715 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640588464 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001269299 |
|---|
| Protein GI | 148549197 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0693455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.349566 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGCCC TCCTGCGTTA CCTGTTCCTG TTGCTCTTGC TGTTCATCGC CCCGGTACAA
GCGGCGGGCT TGCCTGGCCT GCTGGGCGGC AGTGCGCCCG CGCAGCCTGA AGCCACCGAG
CCGCTGGGCA AGTCGCTGGA CGAGGTGATC AAGAACCTCG AAAACGACCA GCAACGGGCC
AAGCTGCTGG CCGACCTGAA AAAACTGCGC GACGCCACCC GGCAATCGCA ACCCAGCGTT
GAACAGGGCG TGCTCGGCCT GATCGGCGGT GCCCTGCATG ACTTTGAAAA ACAGTTCAGC
GGCGATGCCA GTCCATTCCA CCGCTGGGCC GCAGAAATCG AACAAGCCCA GGCCGAACTG
ACCGAACTGG TGGTGCCCGT GCACCAGTGG CCGCCAATCC TGTTCGGTTT TGCTGCAGTG
ATTGTCGTGT GGAGTGTGCT GGCCTACGCC TTCAACTGGG TCGGCCATCG GGTCCGCCTG
CGCTTTGGCC TGAGCGAAGA ACTGCCACAG CACCCGCGTA CCTGGGACCT GGTGCGCTTT
GCCTTGCGCA AGCTCGGCCC CTGGCTGGTA GCGCTGGTGT TCACGGTGTA CCTGAGTTTC
GTGCTGCCGC CATCGCTGGG CAAATCCCTG GCCATGGTGC TGGCCTACGC ACTGGTGGTC
GGTACCTGCT TTTCGGCCAT TTGCGTCATC GCCTTTTCCT TGCTGGACGG CCCACACCGC
CACCGCGCCC TGCACATCCT GCGGCGCCAG GCGTTTCGCC CGTTGTGGCT GATCGGCAGC
TTCGCCGCGT TTGGCGAGGC GATGAGCGAT CCACGCATGC TGGTTGCCCT CGGTACCCAC
CTGGCCCACG CCCTGGCTAC CCTGGCCAAT GTGATTGCCG CACTGTGCAC CGGGCTGTTC
ATCCTGCGCT TTCGCAGGCC GATCGCCCAC CTGATCCGCA ACCAGCCACT GTCGCGGCGC
CTGACCCGAC GCACCCTCAG CGATACCATC GAGATCCTCG GCAGCTTCTG GTTCATTCCG
GCGCTGATCC TGGTGGCCAT TTCGCTGTTC GCCACCTTCG TCTCCGCCGG CGACACCAGC
ACCGCCCTGC GCCAGTCGCT GATGTGCACG GTGCTGGTGG TGGTATGCAT GGTGCTCAAC
GGCCTGGTGC GCCGCCATGC CGCCAACCCC AAGCGGGCCA GCAAGCGCCA GGCGGTGTAC
ACCGAACGCC TGCGCAACTT CGGCTACCTG CTGGTGCACC TGTTCATCTG GCTGGTGTTC
ATCGAGTTGG GCCTGCGCGT GTGGGGCGTG TCGATGATCA GCTTCGCCGA GGGCGACGGC
CATGACATCA GCCTGCGCCT GCTGGGCCTG GCCGGCACAC TGATCGTGGC CTGGCTGGTG
TGGATCCTTG CCGACACCGC CGTACACCAT GCCCTGGTGC GCTCGCGCCG GGGGCTGGCC
AACGCCCGTG CGCAAACCAT GATGCCGTTG ATCCGCAACG TGATGTTCGT GGTCATCTTC
ATCATCGCGG TCATCGTCGC CCTGGCCAAC ATGGGCATGA ACGTCACCCC GCTGCTGGCC
GGCGCCGGTG TGATCGGCCT GGCCATCGGT TTTGGCGCGC AGTCGCTGGT GGCCGACCTG
ATCACCGGCC TGTTCATCAT CATCGAAGAT TCGCTGGCCA TCGACGACTA CGTGGATGTC
GGCGGCCACC TGGGCACGGT GGAAGGGTTG ACCATTCGTA CCGTGCGCCT GCGCGACATC
GACGGCATTG TGCATACCAT CCCGTTCAGC GAAATCAAGA GCATCAAGAA CTACTCGCGG
GAGTTCGGCT ACGCGATCTT CCGCGTGGCA ATCCCGCACA GCATGAACAT CGACCAGGCG
ATCACGCTGG TTCGCGAAGT GGGGCAGAAG CTGCGCAATG ACCCGCTGAT GCGCCGCAAT
ATCTGGTCGC CGCTGGAGCT ACAGGGGGTG GAGAGCTTCG AGTCAGGGTC GGCGATCTTG
CGGGCGCGGT TCAAGACCGC GCCGATCAAG CAGTGGGAGG TGTCGCGGGC GTTCAACCTG
GCCTTGAAGC GGCAGCTGGA TGAAGCCGGG CTGGACCTGG CGACGCCGCG GTTGTCGGTG
CAGGTGGTGA CAGCCGGTGG GGGTGGGATG ACAGAGGCCC GCTCGTAG
|
|---|
| Protein sequence | MPALLRYLFL LLLLFIAPVQ AAGLPGLLGG SAPAQPEATE PLGKSLDEVI KNLENDQQRA
KLLADLKKLR DATRQSQPSV EQGVLGLIGG ALHDFEKQFS GDASPFHRWA AEIEQAQAEL
TELVVPVHQW PPILFGFAAV IVVWSVLAYA FNWVGHRVRL RFGLSEELPQ HPRTWDLVRF
ALRKLGPWLV ALVFTVYLSF VLPPSLGKSL AMVLAYALVV GTCFSAICVI AFSLLDGPHR
HRALHILRRQ AFRPLWLIGS FAAFGEAMSD PRMLVALGTH LAHALATLAN VIAALCTGLF
ILRFRRPIAH LIRNQPLSRR LTRRTLSDTI EILGSFWFIP ALILVAISLF ATFVSAGDTS
TALRQSLMCT VLVVVCMVLN GLVRRHAANP KRASKRQAVY TERLRNFGYL LVHLFIWLVF
IELGLRVWGV SMISFAEGDG HDISLRLLGL AGTLIVAWLV WILADTAVHH ALVRSRRGLA
NARAQTMMPL IRNVMFVVIF IIAVIVALAN MGMNVTPLLA GAGVIGLAIG FGAQSLVADL
ITGLFIIIED SLAIDDYVDV GGHLGTVEGL TIRTVRLRDI DGIVHTIPFS EIKSIKNYSR
EFGYAIFRVA IPHSMNIDQA ITLVREVGQK LRNDPLMRRN IWSPLELQGV ESFESGSAIL
RARFKTAPIK QWEVSRAFNL ALKRQLDEAG LDLATPRLSV QVVTAGGGGM TEARS
|
|---|
| |