| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3962 |
|---|
| Symbol | |
|---|
| ID | 5194914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4468151 |
|---|
| End bp | 4469644 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640588435 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001269270 |
|---|
| Protein GI | 148549168 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2326] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.701093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.023635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAT CTGCCGAAAT CGGCCACAGC ATCGACAAGG AGGCTTACGA CGCCGAGGTA
CCCGCTTTAC GCGAGGCCCT GCTCGAAGCC CAGTACGAAC TCAAGCAGCA GGCGCGGTTT
CCGGTGATCG TGCTGATCAA CGGCATTGAA GGCGCCGGCA AGGGTGAGAC GGTAAAACTG
CTCAACGAGT GGATGGACCC GCGCATGATC GATGTGCTCA CCTTCGACCA GCAGACCGAC
GAAGAGCTGG CCCGCCCACC CGCCTGGCGC TATTGGCGGG CCTTGCCACC CAAGGGGCGG
ATGGGTGTGT TCTTTGGCAA CTGGTACAGC CAGATGCTGC AGGGACGGGT GCACGGGGTG
TTCAAGGATG CCGTGCTCGA TCAGGCCATT ACCGGTGCCG AGCGCCTGGA GGAGATGCTG
TGCGATGAAG GTGCGCTGAT CATCAAGTTC TGGTTCCACC TGTCCAAGAA GCAGATGAAG
GCACGGCTGA AATCGCTCAA GGACGACCCG CTGCACAGCT GGAAGATCAG CCCGCTGGAT
TGGCAGCAGT CGCAAACCTA CGACCGCTTC GTGCGCTTTG GTGAGCGCGT GCTGCGTCGC
ACCAGCCGCG ACTACGCGCC ATGGCACATC ATCGAAGGGG TAGACCCGAA TTACCGCAGC
CTGGCGGTGG GGCGCATTCT GCTGGAAAGC CTGCAAGCCG CGCTGGCCAA TAATCCCAAG
GGCAAGCACC AGGGCAACGT GGCCCCGCTG GGCCACAGCA TCGACGACCG CAGCCTGCTG
GGCGCCCTGG ACATGACCTT GCGCCTGGAC AAGGCCGACT ATCAGGAACA GTTGATCACC
GAACAGGCCC GTCTGGCCGG CCTGCTGCGT GACAAGCGCA TGCGCCGGCA CGCTCTGGTG
GCGGTGTTCG AAGGTAACGA CGCCGCCGGC AAGGGGGGCG CCATCCGCCG CGTGGCGGCA
GCGCTGGACC CGCGGCAGTA CCGTATCGTG CCGATTGCCG CGCCGACCGA AGAAGAGCGC
GCCCAGCCGT ACCTGTGGCG GTTCTGGCGG CACATCCCGG CACGGGGCAA GTTCACCATC
TTCGACCGTT CCTGGTATGG CCGGGTGCTG GTGGAGCGGG TGGAAGGCTT CTGCAGCTCC
GCTGACTGGA TGCGTGCCTA CAGCGAGATC AACGACTTTG AAGAGCAGTT GGTGGATGCC
GGCGTGGTGG TGGTCAAGTT CTGGCTGGCG ATCGACCAGC AGACCCAACT GGAGCGCTTC
GAAGAGCGTG AGCAAATTCC GTTCAAACGC TACAAGATCA CCGAGGATGA CTGGCGCAAC
CGCGACAAGT GGGACGAATA CTCCCAGGCG GTGGGCGACA TGGTCGACCG CACCAGCAGC
GAGATTGCCC CTTGGACGCT GGTAGAGGCC AATGACAAGC GCTGGGCGCG GGTGAAGGTG
GTGCGCACCA TCAACCAGGC GCTTGAGGCG GCGTTTGCCA AGCACAAGAA ATAG
|
|---|
| Protein sequence | MFESAEIGHS IDKEAYDAEV PALREALLEA QYELKQQARF PVIVLINGIE GAGKGETVKL
LNEWMDPRMI DVLTFDQQTD EELARPPAWR YWRALPPKGR MGVFFGNWYS QMLQGRVHGV
FKDAVLDQAI TGAERLEEML CDEGALIIKF WFHLSKKQMK ARLKSLKDDP LHSWKISPLD
WQQSQTYDRF VRFGERVLRR TSRDYAPWHI IEGVDPNYRS LAVGRILLES LQAALANNPK
GKHQGNVAPL GHSIDDRSLL GALDMTLRLD KADYQEQLIT EQARLAGLLR DKRMRRHALV
AVFEGNDAAG KGGAIRRVAA ALDPRQYRIV PIAAPTEEER AQPYLWRFWR HIPARGKFTI
FDRSWYGRVL VERVEGFCSS ADWMRAYSEI NDFEEQLVDA GVVVVKFWLA IDQQTQLERF
EEREQIPFKR YKITEDDWRN RDKWDEYSQA VGDMVDRTSS EIAPWTLVEA NDKRWARVKV
VRTINQALEA AFAKHKK
|
|---|
| |