| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3953 |
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| Symbol | |
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| ID | 5192935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4456862 |
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| End bp | 4459318 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588426 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001269261 |
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| Protein GI | 148549159 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.260128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0078854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAGGGAA ATCGCACACT CGAAGCGCCA AAGTTGCTCG GCATCACATG GCCTTTCATC
GCCGTCGTGG TCCTTCAGGT GGCGTTGGGC AGCCTCAGCC TTTATACGCT GTCGGCCGTG
CGCGCCTATG TCGCGGGCGA AAGCCTGTGG TCCAAGGCGC AGAAAGATGC CATCTACTAC
CTCAGTCTGT ACGGCGAGAC GCGCGACGAC AGCACCTACC AACGCTATCG CCAGGCCATT
ACCGTACCGC AGGGTGACTA TCGTCTGCGC GAAGTGCTCG ACCACCCCAG CCCTGATCTG
GACGCCGCAC GACAGGCGGT TCTGCAAGGT GGCAACCACC CTGACGATGT CGAGCGGATC
ATCTGGTTCT ACCGCAACTT TCGCCATGTC AGCTATATGC AGACAGCCAT CGATTACTGG
GACATCGGTG ACGACTATCT GGCCAAGCTG GATGTACTGG CCGGTGAAAT GCGCCAGCGT
TTTGCCGATG GCCCGGTGGA TGCCGACACC GTCAGCGACT GGAAGGCCCG CATTGTCGCC
ATCAACGAAG GCGTGACCCC GGCCGCCAAG GCGTTCAGTG ATGCCTTGGG CGAAGGCTCG
CGCATGTTGC TACGGGTGCT GCTGATCACC AACCTGCTGA CCGCGATGTT CCTGATCGCC
ATTGCCTGGC GCCGCTCCAG CAAGCTGTTG GCCCAGCGCC AAGCCTTTGC CAGCGCCCTG
CAGGAAGAAA AAGAGCGTGC GCAGATTACC CTGCAGGCCA TCGGTGATGC GGTGATCACC
ACCGATGTCG AAGGCAGTAT CGGCTACATG AACCCGGCCG CCGAGCAATT GACCCACTGG
CAATCCGGGC AGGCCCAGGG CCTGCCGCTG TCGGCGCTGT TCAGCCTGGT GGACGAACAC
GCCGAGGAGG ACGGGCGCAG CTTGGTCGAA CAGGTGCTCA GCGGCAGCCT CAAGGGCGGC
TCCGAGCATG CCCGGCTGAT CCAGCGCCTG GACGGCAGTA CCGTGTCGAT CAACCTGGTC
GGCTCGCCAA TCGTCAATGA TGGCCAGGTC AGTGGCATCG TGCTGGTGCT GCACGATATG
ACCCAGGAAC GCCAGTACAT TGCCAATCTG TCCTGGCAGG CAACCCACGA CGCCCTGACC
GGGCTGGCCA ACCGCCGCGA GTTCGAGTAC CGCCTGGAAC AGGCGCTCAA CGACCTGGCG
CGCCAGGCTG GGCGGCATTC GCTGATGTTC CTTGACCTCG ACCAGTTCAA GCTGGTCAAC
GACACCTGTG GCCACGCTGC CGGCGATGAG TTGCTGCGGC ACATCTGCGC GGTGCTGCAA
TCTGGTCTGC GTGAGGGCGA TACGCTGGCG CGGCTGGGCG GCGATGAATT TGGCGTGCTG
CTGGAAAACT GCCCGCCCGA CCAGGCCGAG CGCATTGGCG AACAACTGCG CCAGATGGTG
CAGAGCCTGC ACTTTGTATG GAAAGGGCGG CCGTTCGTGA CCACGGTCAG CATTGGCCTG
GTGCATATGG CCCAGGCCCC CGGTACCCTG GAGGCCTCGC TGCGCGCCGC CGACATGGCC
TGCTACATGG CCAAGGAAAA GGGCCGAAAC CGTGTGCAGG TGTACCACGC CGACGACAGC
GAACTGTCCA TGCGTTTTGG CGAAATGGCC TGGATCCAGC GCCTGCATGT GGCCCTGGAA
GAAAACCGCT TTTGCCTCTA CGCCCAGGAA ATCGCCCCGC TCAAAACCTT CGAAGGCCCG
GGCCATATCG AAATTCTGTT GCGCCTGCAC GACGAAAGCG GCCGCACCAT CCTGCCCAGC
AGCTTCATCC CGGCGGCCGA GCGCTACGGC CTGATGACCG CGCTGGACCG CTGGGTGGTG
CGCAATGTGT TCATGGTCAT ACGCCAGTGC CTGGAAGAGG GGCGTGAAGG GCCGTTGTCG
ACCTGTGCCA TCAACCTGTC GGGGTCCAGC ATTGGCGACG ACAAGTTCCT TGAATACCTC
CAGCGGTTGT TCGTCGAATA CGCCATTCCG CCGCGAATGA TCTGCTTTGA AATTACCGAA
ACCAGCGCCA TTGCCAACCT GGGCAGCGCC ATTCGCTTCA TCAACGAGCT GAAAGGGCTG
GGTTGCCGTT TCTCGCTCGA TGATTTTTGC GCCGGCATGT CCTCGTTCGC CTATCTCAAG
CATTTGCCCG TGGACTACCT GAAGATTGAC GGGAGTTTCG TCAAGGACAT GCTCGACGAC
CCGGTCAACC GGGCCATGGT CGAGGTCATC AACCATATCG GCCATGTGAT GGGTAAGCGC
ACGATCGCCG AGTTCGTCGA AACACCCTTG ATCGAGCAGG CCTTGCAGGA AATAGGCGTG
GATTACGCCC AGGGCTACCT GATCGAACGC CCCCAGGTGT TCACCTGTGA CAGTCTGCAG
CGCCAACGGA TCGCCGCCCG GCCTCTGTTG CAGCGAGCAC CTGGCACGTT TCGCTAG
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| Protein sequence | MKGNRTLEAP KLLGITWPFI AVVVLQVALG SLSLYTLSAV RAYVAGESLW SKAQKDAIYY
LSLYGETRDD STYQRYRQAI TVPQGDYRLR EVLDHPSPDL DAARQAVLQG GNHPDDVERI
IWFYRNFRHV SYMQTAIDYW DIGDDYLAKL DVLAGEMRQR FADGPVDADT VSDWKARIVA
INEGVTPAAK AFSDALGEGS RMLLRVLLIT NLLTAMFLIA IAWRRSSKLL AQRQAFASAL
QEEKERAQIT LQAIGDAVIT TDVEGSIGYM NPAAEQLTHW QSGQAQGLPL SALFSLVDEH
AEEDGRSLVE QVLSGSLKGG SEHARLIQRL DGSTVSINLV GSPIVNDGQV SGIVLVLHDM
TQERQYIANL SWQATHDALT GLANRREFEY RLEQALNDLA RQAGRHSLMF LDLDQFKLVN
DTCGHAAGDE LLRHICAVLQ SGLREGDTLA RLGGDEFGVL LENCPPDQAE RIGEQLRQMV
QSLHFVWKGR PFVTTVSIGL VHMAQAPGTL EASLRAADMA CYMAKEKGRN RVQVYHADDS
ELSMRFGEMA WIQRLHVALE ENRFCLYAQE IAPLKTFEGP GHIEILLRLH DESGRTILPS
SFIPAAERYG LMTALDRWVV RNVFMVIRQC LEEGREGPLS TCAINLSGSS IGDDKFLEYL
QRLFVEYAIP PRMICFEITE TSAIANLGSA IRFINELKGL GCRFSLDDFC AGMSSFAYLK
HLPVDYLKID GSFVKDMLDD PVNRAMVEVI NHIGHVMGKR TIAEFVETPL IEQALQEIGV
DYAQGYLIER PQVFTCDSLQ RQRIAARPLL QRAPGTFR
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