Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3942 |
Symbol | rpsA |
ID | 5194687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4442129 |
End bp | 4443805 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640588415 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_001269250 |
Protein GI | 148549148 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.121339 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.203067 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAA GCTTTGCAGA ACTCTTTGAA GAAAGCCTGA AAACCCTCAA TCTTCAGCCG GGTGCGATCA TCACCGGTAT CGTTGTCGAC ATCGACGGCG ACTGGGTTAC CGTACACGCT GGCCTGAAGT CCGAGGGCGT CATCCCGCTC GAGCAGTTCT ACAACGAAGC TGGCGAGCTG ACCATCAAGG TCGGTGACGA AGTTCACGTT GCGCTGGACG CGGTCGAAGA CGGCTTTGGC GAAACCAAGC TGTCCCGTGA AAAAGCCAAG CGCGCCGAGT GCTGGATTGT TCTGGAAGCA GCTTTCGCCG CCGAAGAAGT GGTCAAGGGC GTTATCAACG GTAAGGTTAA GGGCGGCTTC ACTGTCGACG TTAACGGCAT CCGTGCGTTC CTGCCGGGCT CCCTGGTTGA TGTCCGCCCA GTGCGTGACA CCACCCACCT GGAAGGCAAA GAGCTGGAAT TCAAGGTCAT CAAGCTGGAC CAGAAGCGCA ACAACGTTGT CGTTTCCCGT CGCAGCGTGC TGGAAGCCGA GAACAGCGCC GAGCGCGAAG CCCTGCTGGA AACCCTGCAG GAAGGCCAGC AAGTCAAAGG TATCGTCAAG AACCTCACCG ACTACGGCGC ATTCGTGGAC CTGGGCGGTA TCGACGGCCT GCTGCACATC ACCGACATGG CCTGGAAGCG CATCAAGCAC CCATCGGAAA TCGTTAACGT TGGCGACGAA GTCGACGTAC GCGTTCTGAA GTTCGACCGT GAGCGCAACC GCGTTTCGCT GGGTCTGAAG CAGATGGGCG AAGATCCGTG GGTAGCTATC ACTGCCCGTT ACCCAGAAGG TACTCGCGTA CAGGCTCGCG TTACCAACCT GACCGACTAC GGCTGCTTCG CTGAGCTGGA AGAAGGCGTT GAAGGTCTGG TACACGTTTC CGAAATGGAC TGGACCAACA AGAACATCCA CCCGTCGAAA GTCGTTCAGG TTGGCGACGA AGTGGAAGTC ATGGTTCTGG ACATCGACGA AGAGCGTCGT CGTATCTCCC TGGGCATCAA GCAGTGCAAG TCCAACCCAT GGGAAGACTT CTCCGGCCAG TTCAACAAGG GTGACAAGAT CACCGGTACC ATCAAGTCGA TCACCGACTT CGGTATCTTC ATTGGTTTGG ACGGCGGCAT CGACGGCCTG GTTCACCTGT CCGACATCTC CTGGAACGAA ACCGGCGAAG AAGCCGTGCG TCGTTTCAAG AAGGGCGACG AGCTGGAAAC CGTCATCCTG TCGGTCGACC CAGAGCGCGA GCGCATCTCC CTGGGCATCA AGCAGCTGGA AGACGATCCG TTCTCCAACT TCGTTGCTGT CAATGACAAG GGCGCTATCG TCAAGGGCAT CGTGAAAGAA GTTGACGCCA AAGGCGCCAT CGTCACCCTG GCCGACGACA TCGAAGCCAC TCTGAAAGCT TCCGAAATCA GCCGTGACCG CGTTGAAGAC GCGCGTAACG TTCTGAAGGA AGGCGAAGAG ATCGAAGCCA AGATCATCAG CGTTGACCGC AAGTCCCGCG TTATCAGCCT GTCGATCAAA TCGAAAGACG ACGCTGAAGA GCGCGAAGCT ATCCAGAGCC TGAAAAACGC TCCGGAAGCT GCTGCCGACA CCACCATGGC TGCGCTGCTG CGCGAAGCAA TGGCCAAGCA GAACTGA
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Protein sequence | MSESFAELFE ESLKTLNLQP GAIITGIVVD IDGDWVTVHA GLKSEGVIPL EQFYNEAGEL TIKVGDEVHV ALDAVEDGFG ETKLSREKAK RAECWIVLEA AFAAEEVVKG VINGKVKGGF TVDVNGIRAF LPGSLVDVRP VRDTTHLEGK ELEFKVIKLD QKRNNVVVSR RSVLEAENSA EREALLETLQ EGQQVKGIVK NLTDYGAFVD LGGIDGLLHI TDMAWKRIKH PSEIVNVGDE VDVRVLKFDR ERNRVSLGLK QMGEDPWVAI TARYPEGTRV QARVTNLTDY GCFAELEEGV EGLVHVSEMD WTNKNIHPSK VVQVGDEVEV MVLDIDEERR RISLGIKQCK SNPWEDFSGQ FNKGDKITGT IKSITDFGIF IGLDGGIDGL VHLSDISWNE TGEEAVRRFK KGDELETVIL SVDPERERIS LGIKQLEDDP FSNFVAVNDK GAIVKGIVKE VDAKGAIVTL ADDIEATLKA SEISRDRVED ARNVLKEGEE IEAKIISVDR KSRVISLSIK SKDDAEEREA IQSLKNAPEA AADTTMAALL REAMAKQN
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