Gene Pput_3942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3942 
SymbolrpsA 
ID5194687 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4442129 
End bp4443805 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content57% 
IMG OID640588415 
Product30S ribosomal protein S1 
Protein accessionYP_001269250 
Protein GI148549148 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0539] Ribosomal protein S1 
TIGRFAM ID[TIGR00717] ribosomal protein S1 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.121339 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.203067 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAA GCTTTGCAGA ACTCTTTGAA GAAAGCCTGA AAACCCTCAA TCTTCAGCCG 
GGTGCGATCA TCACCGGTAT CGTTGTCGAC ATCGACGGCG ACTGGGTTAC CGTACACGCT
GGCCTGAAGT CCGAGGGCGT CATCCCGCTC GAGCAGTTCT ACAACGAAGC TGGCGAGCTG
ACCATCAAGG TCGGTGACGA AGTTCACGTT GCGCTGGACG CGGTCGAAGA CGGCTTTGGC
GAAACCAAGC TGTCCCGTGA AAAAGCCAAG CGCGCCGAGT GCTGGATTGT TCTGGAAGCA
GCTTTCGCCG CCGAAGAAGT GGTCAAGGGC GTTATCAACG GTAAGGTTAA GGGCGGCTTC
ACTGTCGACG TTAACGGCAT CCGTGCGTTC CTGCCGGGCT CCCTGGTTGA TGTCCGCCCA
GTGCGTGACA CCACCCACCT GGAAGGCAAA GAGCTGGAAT TCAAGGTCAT CAAGCTGGAC
CAGAAGCGCA ACAACGTTGT CGTTTCCCGT CGCAGCGTGC TGGAAGCCGA GAACAGCGCC
GAGCGCGAAG CCCTGCTGGA AACCCTGCAG GAAGGCCAGC AAGTCAAAGG TATCGTCAAG
AACCTCACCG ACTACGGCGC ATTCGTGGAC CTGGGCGGTA TCGACGGCCT GCTGCACATC
ACCGACATGG CCTGGAAGCG CATCAAGCAC CCATCGGAAA TCGTTAACGT TGGCGACGAA
GTCGACGTAC GCGTTCTGAA GTTCGACCGT GAGCGCAACC GCGTTTCGCT GGGTCTGAAG
CAGATGGGCG AAGATCCGTG GGTAGCTATC ACTGCCCGTT ACCCAGAAGG TACTCGCGTA
CAGGCTCGCG TTACCAACCT GACCGACTAC GGCTGCTTCG CTGAGCTGGA AGAAGGCGTT
GAAGGTCTGG TACACGTTTC CGAAATGGAC TGGACCAACA AGAACATCCA CCCGTCGAAA
GTCGTTCAGG TTGGCGACGA AGTGGAAGTC ATGGTTCTGG ACATCGACGA AGAGCGTCGT
CGTATCTCCC TGGGCATCAA GCAGTGCAAG TCCAACCCAT GGGAAGACTT CTCCGGCCAG
TTCAACAAGG GTGACAAGAT CACCGGTACC ATCAAGTCGA TCACCGACTT CGGTATCTTC
ATTGGTTTGG ACGGCGGCAT CGACGGCCTG GTTCACCTGT CCGACATCTC CTGGAACGAA
ACCGGCGAAG AAGCCGTGCG TCGTTTCAAG AAGGGCGACG AGCTGGAAAC CGTCATCCTG
TCGGTCGACC CAGAGCGCGA GCGCATCTCC CTGGGCATCA AGCAGCTGGA AGACGATCCG
TTCTCCAACT TCGTTGCTGT CAATGACAAG GGCGCTATCG TCAAGGGCAT CGTGAAAGAA
GTTGACGCCA AAGGCGCCAT CGTCACCCTG GCCGACGACA TCGAAGCCAC TCTGAAAGCT
TCCGAAATCA GCCGTGACCG CGTTGAAGAC GCGCGTAACG TTCTGAAGGA AGGCGAAGAG
ATCGAAGCCA AGATCATCAG CGTTGACCGC AAGTCCCGCG TTATCAGCCT GTCGATCAAA
TCGAAAGACG ACGCTGAAGA GCGCGAAGCT ATCCAGAGCC TGAAAAACGC TCCGGAAGCT
GCTGCCGACA CCACCATGGC TGCGCTGCTG CGCGAAGCAA TGGCCAAGCA GAACTGA
 
Protein sequence
MSESFAELFE ESLKTLNLQP GAIITGIVVD IDGDWVTVHA GLKSEGVIPL EQFYNEAGEL 
TIKVGDEVHV ALDAVEDGFG ETKLSREKAK RAECWIVLEA AFAAEEVVKG VINGKVKGGF
TVDVNGIRAF LPGSLVDVRP VRDTTHLEGK ELEFKVIKLD QKRNNVVVSR RSVLEAENSA
EREALLETLQ EGQQVKGIVK NLTDYGAFVD LGGIDGLLHI TDMAWKRIKH PSEIVNVGDE
VDVRVLKFDR ERNRVSLGLK QMGEDPWVAI TARYPEGTRV QARVTNLTDY GCFAELEEGV
EGLVHVSEMD WTNKNIHPSK VVQVGDEVEV MVLDIDEERR RISLGIKQCK SNPWEDFSGQ
FNKGDKITGT IKSITDFGIF IGLDGGIDGL VHLSDISWNE TGEEAVRRFK KGDELETVIL
SVDPERERIS LGIKQLEDDP FSNFVAVNDK GAIVKGIVKE VDAKGAIVTL ADDIEATLKA
SEISRDRVED ARNVLKEGEE IEAKIISVDR KSRVISLSIK SKDDAEEREA IQSLKNAPEA
AADTTMAALL REAMAKQN