| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3925 |
|---|
| Symbol | |
|---|
| ID | 5193895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4419270 |
|---|
| End bp | 4420619 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640588398 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001269233 |
|---|
| Protein GI | 148549131 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.466767 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCTG ATCAACCTGT CATCAGCGTC AAGAACGTCT CCAAATGCTT TTACAGCTAC
GACAAGCCAC ATGACCGGCT GAAACAGGCA ATCGTCCCGC GACTCCAACG TTGGGCCGGC
GACCCGGTCA CTACATACGG CAAGGAATAC TGGGCCCTAC GCGACATCAG CTTCGATGTC
AACAAAGGGG AAACAGTAGG CGTCGTGGGC CGCAACGGGT CAGGGAAGTC GACATTGCTG
CAGATAATTT GCGGCACCTT GACGCCGACG CTGGGGGAGG TTGAGACCCA CGGTCGTATC
GCCGCACTGC TGGAGCTGGG CTCTGGGTTC AACCCTGAAT TCACCGGGCG CGAAAACGTC
TACCTCAACG GTGCGGTCCT CGGCCTGAGC CGCGAGGAAA TCGACCAGCG CTTTGATGCT
ATTGCCGGTT TTGCAGATAT CGGCGAATTC CTTGATCACC CCGTTAAAAC CTATTCCAGC
GGAATGGCCG TACGACTGGC ATTTGCCGTA CAAGCACAGG TCGACCCGGA AATCCTCGTG
GTTGACGAGG CATTGTCGGT TGGCGACGCG AGGTTCCAGG CCAAATGCTT TGAGCGCCTA
CGCCAGCTCA AAGATAACGG TACCAGTATC CTGCTCGTCA CCCACTCCAG TGAACAAGTG
GTCACGCATT GCTCTCGGGC GATCCTGCTG GAAAAGAGTC GCGTCGAAAT GATTGGCAAA
TCGCGCCCGG TCATTAACCG TTACACCGAC ATCCTCTTCG GTCGCGACAA AGAGGAAATC
AAGCCTGGGT TGGAGCAAAA CGCTCAAAGC GCTTCCACCG AGTCAGCAGA CGTACCGCGC
GAAGCCATTT CACTCTTGTT CGACCAGGAT GCTTACAGTA CTCGGCCCAA CTACAACCAG
CATGAATATC GCTGGGGAGA TGGCGCTGCG ACCCTCACTG ACTTCCACCT GAGCGCCGCA
GGCAATGCTT ATCCCAACAG CGTGGAGCCA GGCGACGATA TCACCCTGAC GCTCGCGTTC
ACATTCAACC GCCCCGTCAT CAATCCGATC ATTGGCTTTA CCATCAAGAC CAAGGAAGGC
GTCACGGTCT ACGGCACCAA TTCATACCTT CTTGATTGCG AAGATGCCCG AGCCCTGGGC
GAAGCTGGCG CCAGGGCTAC CGCGCGCCTG CAATTCAAAA ACAGGCTAGC GACAGGCGAT
TATTTTATAT CCATCGGCCT GGCATCCCGC GAAGGCGAAG AAATCGTCCC TCACGATCGT
CGCTACGACT CCATTCATTT TATCGTTGAG CCAACACCCA ATCTCTTGGG CCTGATTGAC
CTCGCTCTGA CTATGGAAAT AAACCGGTAA
|
|---|
| Protein sequence | MSSDQPVISV KNVSKCFYSY DKPHDRLKQA IVPRLQRWAG DPVTTYGKEY WALRDISFDV
NKGETVGVVG RNGSGKSTLL QIICGTLTPT LGEVETHGRI AALLELGSGF NPEFTGRENV
YLNGAVLGLS REEIDQRFDA IAGFADIGEF LDHPVKTYSS GMAVRLAFAV QAQVDPEILV
VDEALSVGDA RFQAKCFERL RQLKDNGTSI LLVTHSSEQV VTHCSRAILL EKSRVEMIGK
SRPVINRYTD ILFGRDKEEI KPGLEQNAQS ASTESADVPR EAISLLFDQD AYSTRPNYNQ
HEYRWGDGAA TLTDFHLSAA GNAYPNSVEP GDDITLTLAF TFNRPVINPI IGFTIKTKEG
VTVYGTNSYL LDCEDARALG EAGARATARL QFKNRLATGD YFISIGLASR EGEEIVPHDR
RYDSIHFIVE PTPNLLGLID LALTMEINR
|
|---|
| |