Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3923 |
Symbol | |
ID | 5195356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4417908 |
End bp | 4418453 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640588396 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | YP_001269231 |
Protein GI | 148549129 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.380883 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCA CTCACCTTGC GATTCCGGAT GTTGTTCTTT TCGAGCCGAA GGTTTTCGGC GATCAGCGGG GATTTTTCTA CGAAAGCTTC AATCAGAAGG TGTTTGAAGA GGTTGTAGGT AGGTCGGTCA CGTTCGTTCA GGACAACCAT TCCAAATCGG TGAAGGGCGT GCTTCGCGGC TTGCACTACC AGATAAAGCA TGCGCAAGGC AAACTGGTCC GGGTAACGCA TGGCGAGGTT TTCGATGTTG CCGTGGATCT GCGCAAGAGC TCACCAACCT TTGGCCAGTG GGTTGGCGCT CATTTGAGCT CAACCAACCA GCATCAATTG TGGATCCCCG AAGGCTTCGC CCATGGTTTC GTCGTGCTTT CGGAAACCGC TGAGTTCCTC TACAAGACCA CCGATTACTG GGCACCTAAG TTCGAGCGCA GCCTGGCCTG GAATGACCCA ACCGTGGCGA TCGAATGGCC TTATACCGAC GCACCGACCT TGTCCGCCAA AGATGACATC GCTGCCCTGC TGCAGGATGC AGAGGTGTTT GAATAG
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Protein sequence | MKATHLAIPD VVLFEPKVFG DQRGFFYESF NQKVFEEVVG RSVTFVQDNH SKSVKGVLRG LHYQIKHAQG KLVRVTHGEV FDVAVDLRKS SPTFGQWVGA HLSSTNQHQL WIPEGFAHGF VVLSETAEFL YKTTDYWAPK FERSLAWNDP TVAIEWPYTD APTLSAKDDI AALLQDAEVF E
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