Gene Pput_3920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3920 
Symbol 
ID5192387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4406963 
End bp4408315 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content64% 
IMG OID640588393 
Product8-amino-7-oxononanoate synthase 
Protein accessionYP_001269228 
Protein GI148549126 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes 
TIGRFAM ID[TIGR00858] 8-amino-7-oxononanoate synthase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.193624 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGCCA GAACCCCGAC CGGCCTTGGT GGTGATGCCA AGCAACGCCT GATCCAGCAA 
GCCCTCGCCC GGCGCCGCCA TGTGGCTGCC GAGGGCGAGC AGGGCGCCAC CCTGGAGCAG
GTACAGCAGG CTGCCCTGAA GGTGCCCGAA GCGCACTATC GCTTTGATCA GCACCCGGGG
TACCAGCAAC TGCGGGTAAT CCAGCAGAGT GCCATGCAGC TGGGCGTGAG CAACCCGTTC
TTCCGTATGC ACCAGGGCAC CGCCGGCGCC CAGACGCAGA TTGGCGAGCG CGAGTACCTC
AACTTTGCCA GTTACAACTA CCTGGGTTAC TCCGGCCACC CGACCGTGGC CGAAGCGGCC
AAGGCTGCGA TTGACCGCTA CGGTACCTCG GTGTCGGCCA GCCGCCCGGT TTCTGGCGAC
CGCCCGCTGC ACCGCGAGCT CGAGCGCGAA CTGGCCCGCC TGTACGAGGT GGACGATGCG
GTGGTGATGG TCAGCGGCCA TGCCACCAAC GTCACCACCA TCGGCTACCT GTTCGGGCCA
CGCGACCTGG TGGTGCATGA CGAGCTGATT CACAACAGCG TGTTGCAGGG TATCCAGCTG
TCGGGTGCCC GCCGTCTGAG CTTTGCCCAC AACGACTGGC AGGCGCTGGA CCGCCTGCTG
GGCGAGCAAC GCCAGCACTT CGAGCGGGTG CTGGTGGTGG TGGAAGGCAT CTACAGCATG
GACGGTGATT ACCCTGAGCT GCCCCGGTTC GTCGAGCTCA AGCATAAGCA CAAGGTTTTC
CTGATGGTGG ATGAAGCCCA TTCGCTGGGG GTGATGGGTG CGACGGGCAA AGGTATTCGT
GAGCATTTTG GGTTGGCTGG CGATGACGTC GACATCTGGA TGGGGACCTT GAGCAAGACC
CTGGCCAGTT GCGGTGGGTA CATTGCGGGC CGCACGGCAC TGATCGAGCA CCTGAAGTTT
CTGGCGCCGG GCTTCTTGTA CAGTGTTGGC ATGCCGCCGG CGGTCACGGC CTCTGCGCTG
GCAGCGTTGA AGCTGCTGGC TGCAGACAGC GAGCGGGTAG CGCAAGTGCA GGCGCGCGGG
GAGCTGTTCC TGCGCCTGGC GCGTGAAGCT GGGCTGGACA CGGCGACCAG TACCGGGTTA
GCGGTGATCC CGGTGATTAC CGGCAGTTCG TTCAAGGCCG GCCGTTTGTC CAGCGCCCTG
TTCGAGCGTG GCATCAATGC CCAGCCGATC CTGTACCCGG CGGTGCCGGA GCATTCGGCG
CGGGTGCGGT TTTTTGTGTC TTGCGAGCAT ACCGAAGAGC AGATCAGGCA TACCGTTGCG
GTGGTGGCGC AGGAGATGGC GCGGCTGGGG TGA
 
Protein sequence
MTARTPTGLG GDAKQRLIQQ ALARRRHVAA EGEQGATLEQ VQQAALKVPE AHYRFDQHPG 
YQQLRVIQQS AMQLGVSNPF FRMHQGTAGA QTQIGEREYL NFASYNYLGY SGHPTVAEAA
KAAIDRYGTS VSASRPVSGD RPLHRELERE LARLYEVDDA VVMVSGHATN VTTIGYLFGP
RDLVVHDELI HNSVLQGIQL SGARRLSFAH NDWQALDRLL GEQRQHFERV LVVVEGIYSM
DGDYPELPRF VELKHKHKVF LMVDEAHSLG VMGATGKGIR EHFGLAGDDV DIWMGTLSKT
LASCGGYIAG RTALIEHLKF LAPGFLYSVG MPPAVTASAL AALKLLAADS ERVAQVQARG
ELFLRLAREA GLDTATSTGL AVIPVITGSS FKAGRLSSAL FERGINAQPI LYPAVPEHSA
RVRFFVSCEH TEEQIRHTVA VVAQEMARLG