| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3913 |
|---|
| Symbol | |
|---|
| ID | 5191880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4397985 |
|---|
| End bp | 4399304 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640588386 |
|---|
| Product | capsule polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001269221 |
|---|
| Protein GI | 148549119 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3562] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGAC TTGAAACGAC GCTTGAGCAG TTTGTTGGGC AGGAAGCGCC CGACCAACTG
AATGCAAGGG CGACGCGTGG TCCGCTGCTG CGTATCCCGT CACACAATTT TCTGCTGCTT
CAGGGTGTCA GTTCGCCCTT CTTCAGCCGC CTTGCCAAGG GGCTGCGGGA TATCGGCCAG
CGAGTGCACA GTGTGCGCTT CAACGTCGGT GACGCCCTGT ACGGCCCCGG CGGCGCGCAG
CTGACCTGCC CGCACGCCCC GGAAGACATG GAGGCCTGGT ATTCACAGGT GTTCCGCCAA
CTGGATATCA CCGACCTGGT GCTGTTCGGC GACTGCCGCC CGGTACACCG CCCGGCCGTG
ACCCTGGCGC GGCTGTCGGG TATTCGCGTG CACGTGTTCG AGGAAGGCTA CTTTCGGCCC
TATTGGGTGA CGCTGGAGCG CGACGGGGTC AACAACAACT CGCGTTTGCC ACGTGACCCG
CAGTGGTACC GCGATGTGGG CAAGTACATT CCGCGCTATC AGAATGGCAA CCCGTTCAAG
CTGTCGTTCG CCGCACGTGC CACGCACGAT GTGCTGTACC ATGCCGGCGG CGCGCTGAAC
CGGCTGTGCT TCCCGCGCTA CCGCACCCAT GCCCCGTTCA ACGCCGCCAT GGAGTACGCC
GGGTTTATCC GCCAGGGCAT GCGCCTGCTG CGCGCCCGTG TGCATGACGA CGCGCTGGTG
GCCGAAGTGG CCCGCGAGCG GCACCCCACG TTTTTGCTGC CCTTGCAGCT GGACAGCGAT
GCGCAAATCC GCGACCACTC GCCGTTCCAG AACATGACCC AGGTGATCGA GCATGTGATC
GACTCGTTCT CGCTCAACGC GCCCTTCGAT GCGCGCCTGC TGGTGAAAAA CCACCCGTTG
ACGCCTGGGC TGGTCAACTA CCGCAAGGTC ACCGAGCAGT TGGCGCGCCA GTACGACGTG
GCCGAGCGTG TCGACTTCAT GGAAAGCGGG CACATGCCTA CGCTGCTCTC GCACATCACC
GGCATGATCA CCGTCAACAG TACCGCGGGG GCTTCTGCAT TGCTGCACCA CCGCCCTACC
TGCACGCTGG CCGAGCCGAT CTACGCGATG CCGGGGCTAA CCCATCAGGG CGGCCTGGAT
GATTTCTGGC AGCAGCCCGA AGCGCCCGAC AACACGCTGT TTCAACGCTT CCGCAACACG
GTCATCCACA CCACTCAGGT CAACGGCGGC TTCTACACCG CCTGTGGCAT GGACATGGCC
GTGGCCAACT GCCTGGAAGT GCTGATGGCG AAAACCTCAA GAATCGAAAA ATACCTATGA
|
|---|
| Protein sequence | MAGLETTLEQ FVGQEAPDQL NARATRGPLL RIPSHNFLLL QGVSSPFFSR LAKGLRDIGQ
RVHSVRFNVG DALYGPGGAQ LTCPHAPEDM EAWYSQVFRQ LDITDLVLFG DCRPVHRPAV
TLARLSGIRV HVFEEGYFRP YWVTLERDGV NNNSRLPRDP QWYRDVGKYI PRYQNGNPFK
LSFAARATHD VLYHAGGALN RLCFPRYRTH APFNAAMEYA GFIRQGMRLL RARVHDDALV
AEVARERHPT FLLPLQLDSD AQIRDHSPFQ NMTQVIEHVI DSFSLNAPFD ARLLVKNHPL
TPGLVNYRKV TEQLARQYDV AERVDFMESG HMPTLLSHIT GMITVNSTAG ASALLHHRPT
CTLAEPIYAM PGLTHQGGLD DFWQQPEAPD NTLFQRFRNT VIHTTQVNGG FYTACGMDMA
VANCLEVLMA KTSRIEKYL
|
|---|
| |