| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3909 |
|---|
| Symbol | |
|---|
| ID | 5192417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4391758 |
|---|
| End bp | 4393044 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640588382 |
|---|
| Product | 3-deoxy-D-manno-octulosonate cytidylyltransferase |
|---|
| Protein accession | YP_001269217 |
|---|
| Protein GI | 148549115 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase
[COG1778] Low specificity phosphatase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase
[TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.790308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATT CTGAACAGCG GATTGCTATC GTTATCCCTG CCCGCTTTGG CTCCACTCGT
CTTCCAGGAA AACCATTGGC GGACATCGCT GGAAAGCCAA TGGTGCAGCA CGTTTATGAG
CGCGCATTGC AGGTGAAAAA TGCGCAGTGC GTAGTCATTG CAACTGACGA TGAACGTGTT
GCGAATGCCG TACGCGATTT TGGTGGCGAG TACGTCATGA CCTCGCCAGA TCACCCCTCA
GGCACCGATC GCCTTGCCGA GGTCATGGCA CAGGTTGATG CTGATATCTA CATCAACTTG
CAAGGTGATG AGCCATTGGT ACGTCCAGGT GATATTGAAA CACTTGCGAC CGGCATGCTT
GCCGATCACG ACGTTAGTGT AGGCACCCTG TGCCACCTTA TTGATACAGA AGAAGCAGTC
AACCCCAACA CGGTAAAAGT CGTGCTGGCT GAAAATGGCA ATGCGCTCTA CTTTAGTCGC
TCACCGATTC CATATCCTCG CGACAGTCAA ACTGCGACTT ACTTGAAGCA TGTAGGCGTC
TACGCTTACC GGCGAGCAGT TTTATCTGAG TACTCTAGGC TGCCACAGCC GATGATAGAG
CATACAGAGA AGCTAGAACA GCTTCGCTTA TTGGCTGCCG GGTATAGTAT CCGCGCCTAT
CGCGTTGAAC CAACCGGACC AGGCGTAGAT ACGCCTGAGT GCTTAGAAAA AGTTCGGGCA
CTAATTGCCG GACAGCCTCT GACTTCAAAA CCGAAACTGG CGGATATCCG ATTAGTGATT
ACTGACGTAG ATGGCGTTCT TACTGACGGA GGAATTTATT ACGACTCTAC TGGCGAATGC
CTCAAACGTT TCCATGTTCG AGACGGTATG GGCATGCGCC TGCTCGAAGA AAATGGTGTT
CGAGTAGCGG TGCTGTCAGG ACGTGACTCA GCAACATTGC GCAAGCGAGT AACCGATCTG
GGTATAACCC TTCACCAATT TGGCGTGAAG GACAAATTAA AGGCTTGTAA TCAGCTAATG
GAAGAGGCCG GCGTAACAGC GGAACAAACT GCCTGTATCG GTGATGATTG TATCGACTTA
CCGGCATTTT CCGCATGCGG GATTTCTTTT GCTGTGGCGG ACGCTCCCGT CTATGTAAAA
GCAGCCGCCA CAGAAACGCT CCTCGCAATG GGCGGGACTG GAGCTTTCAG AGAAGTGGCA
GACGCCATCT TGTGTGCACA GGGTAAAAGC GCAGTTCTCT TAACCGCAGC AGGCTATGCA
CAGGTAATGG CGAATATGGC GCAATGA
|
|---|
| Protein sequence | MANSEQRIAI VIPARFGSTR LPGKPLADIA GKPMVQHVYE RALQVKNAQC VVIATDDERV
ANAVRDFGGE YVMTSPDHPS GTDRLAEVMA QVDADIYINL QGDEPLVRPG DIETLATGML
ADHDVSVGTL CHLIDTEEAV NPNTVKVVLA ENGNALYFSR SPIPYPRDSQ TATYLKHVGV
YAYRRAVLSE YSRLPQPMIE HTEKLEQLRL LAAGYSIRAY RVEPTGPGVD TPECLEKVRA
LIAGQPLTSK PKLADIRLVI TDVDGVLTDG GIYYDSTGEC LKRFHVRDGM GMRLLEENGV
RVAVLSGRDS ATLRKRVTDL GITLHQFGVK DKLKACNQLM EEAGVTAEQT ACIGDDCIDL
PAFSACGISF AVADAPVYVK AAATETLLAM GGTGAFREVA DAILCAQGKS AVLLTAAGYA
QVMANMAQ
|
|---|
| |