| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3908 |
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| Symbol | |
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| ID | 5191752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4390886 |
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| End bp | 4391728 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640588381 |
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| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
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| Protein accession | YP_001269216 |
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| Protein GI | 148549114 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
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| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.371791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAAA TTAAAGATAG TATTATCTGC TCAAATGATG CCCCCTTCGT CCTTTTCGGT
GGCATCAACG TCCTTGAGTC TGAAGAATTA GCCTTGACCG CCTGCGCAGA GTATGTTCGT
GTCACTGAGA AATTGGGTAT TCCCTATGTA TTCAAAGCCA GCTTCGACAA AGCGAACCGG
TCGTCTATTC ACTCCTACCG CGGCCCCGGC ATGGAAGAAG GCCTTCGCAT TTTTGAGAAA
GTCAAAGCTG AGTTTGGTGT ACCAATCATC ACCGATGTCC ATGAAATCTC TCAGGCCGCT
CCAGTAGCTG AAGTTGTGGA TGTACTCCAA CTACCCGCTT TCCTCGCCCG ACAAACGGAC
CTTGTTGTAG CCCTGGCCAA AACAGGCAAA CCGGTCAATA TTAAGAAGCC TCAGTTTTTG
AGCCCTTCGC AAATGCGTAA TATCGTGGAT AAGTTTCAGG AGGCGGGAAA CGATCAACTA
ATACTATGCG ACCGCGGCAG CTGCATGGGA TATGACAACT TGGTCGTAGA CATGCTTGGC
TTCGGCGTGA TGAAGCGTAC CTGCAACAAT CTTCCAATTA TATTCGATGT CACACATGCA
TTACAAAACC GCGACCCCTC TGGCGCAGCT TCTGGCGGAC GGCGTGAACA AGTTGTCGAT
CTGGCACGTG CAGGCATGGG CGTAGGCCTG GCTGGATTAT TCTTAGAGGC ACACCCTAAT
CCAATCCAAG CCAAGTGCGA TGGCCCTAGC GCATTGCCTT TGGATAAATT GGAGCCATTC
TTAGCCCAGA TCAAGGCACT TGATGACTTA GTCAAATCTT TCGAGCCATT GGTAATTTCA
TAA
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| Protein sequence | MIKIKDSIIC SNDAPFVLFG GINVLESEEL ALTACAEYVR VTEKLGIPYV FKASFDKANR
SSIHSYRGPG MEEGLRIFEK VKAEFGVPII TDVHEISQAA PVAEVVDVLQ LPAFLARQTD
LVVALAKTGK PVNIKKPQFL SPSQMRNIVD KFQEAGNDQL ILCDRGSCMG YDNLVVDMLG
FGVMKRTCNN LPIIFDVTHA LQNRDPSGAA SGGRREQVVD LARAGMGVGL AGLFLEAHPN
PIQAKCDGPS ALPLDKLEPF LAQIKALDDL VKSFEPLVIS
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