| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3904 |
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| Symbol | |
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| ID | 5194983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4384613 |
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| End bp | 4385719 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640588377 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_001269212 |
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| Protein GI | 148549110 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3524] Capsule polysaccharide export protein |
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| TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.122006 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTA CGGGTAAAAA GAAGGGCTGG CGCCTAGCAA TCACCATGGT GGTTTTGCCG
ATGATTTTGG CAGGCGTGTA CTACGGCGTG TTCGCCATCG ATCGCTTTGT CAGCTCTGCC
CAGGTGGTGG TACGCCAGGA CGGTAGCAAT CAAGGTGCTC AGATGCCAGG CCTCGCCACC
CTCCTCACCG GCACAAACCC CTCCTCACGT GAAGAAACTC TTTATCTGCG CGAATACATC
ACGTCAATGG ACATGATGTT ACTTCTCGAA GACCGCGTGC AATGGATCGA GCAATACGCC
GGCCAGCGCA GTGATGTGTT CTTCTGGCTC GATAAAGACG CGCCGCGCGA AGACTTGCTC
AAGTATTACC AGCGTATGGT ATCGGCCCAT TATGACGAAA CCACTGGCCT GTTGCGCGTT
GAAGTTCAGG CATTCACCCC TGAGCTTTCA GAGAAAATGC TGCGTGTCAT CCTTGAAGCC
AGCGAGCACT TCGTCAACGA GGTCAGTCAC AACATTGCCC GCGAGCAAAT GAAGTTCGCT
CAAGGAGAAC TGGAAACTGC GCGCGTCAAC TACTCCAAGC GCAAGACCCA GCTATTAGAT
TTCCAGAATG AGAATAAAGT ACTGGACGGT GGAAATACCG CACAAAGCCG AGCCAGCATC
ATTGCCGACC TTGAAAGCCA ATACACCAAG GAGCAAGCCG TTCTCACCGA GATGTCATTC
AAACTTCGCC CCGATGCCCC ACAAGTTCGC CAGCAGAAGC AGAGAGTTGC AGCCATCACT
CAGCAACTAG CCAAAGAAAA ACGCTTGCTA GTTTCATCCC CTCAAGGCTC GCAACTCAAC
GTAGTAGCAT CGCGCTATCA ACAGTTGACT CTAGATGCAG GGATCGCGGA AGAAACCTAC
AAGAGTGCCG TTGCTGCGCT CGACAACGCT CGCGTAGAAG CGAGCAAAAA AATTCGCACC
TTGGTCACCG TCGTCAGCCC TAATACACCC CAACTCGCTT TGTATCCAGA GCGCTGGTAC
AACTTGGCAA CTATTTTGCT TGGTCTCCTA ATGCTGTACG GCATTACCCG CTTCATTCTG
GCTTCGATCG AGGATCATCG TGATTAA
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| Protein sequence | MSSTGKKKGW RLAITMVVLP MILAGVYYGV FAIDRFVSSA QVVVRQDGSN QGAQMPGLAT
LLTGTNPSSR EETLYLREYI TSMDMMLLLE DRVQWIEQYA GQRSDVFFWL DKDAPREDLL
KYYQRMVSAH YDETTGLLRV EVQAFTPELS EKMLRVILEA SEHFVNEVSH NIAREQMKFA
QGELETARVN YSKRKTQLLD FQNENKVLDG GNTAQSRASI IADLESQYTK EQAVLTEMSF
KLRPDAPQVR QQKQRVAAIT QQLAKEKRLL VSSPQGSQLN VVASRYQQLT LDAGIAEETY
KSAVAALDNA RVEASKKIRT LVTVVSPNTP QLALYPERWY NLATILLGLL MLYGITRFIL
ASIEDHRD
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