| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3903 |
|---|
| Symbol | |
|---|
| ID | 5194982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4383905 |
|---|
| End bp | 4384558 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640588376 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001269211 |
|---|
| Protein GI | 148549109 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.106958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCGAAC TCAGAAACGT CACCAAGTCA TACCTCACGC CCAATGGCCG ACGGTATGTT
TTCCGCAATC TTTCGCTGGC AATTCCGCCT GGCAAGAATA TCGGACTGAT CGGCCGTAAC
GGCGCAGGCA AGTCCACCCT TATGCGCCTG CTGGGCGGAG CTGACGTTCC CGATTCAGGC
ACCATCGCTA CCGACCGCAG CATATCGTGG CCGGTCGGCT TGACTGGCGG TTTCCAAGGC
AGCATGACCG GTCGCGACAA CATCAAGTTC GTTTGCCGTG TCTATGGAGC CACAGGCGAA
GCGATGCGCG AGAAGATTCG TTATGTACAA GAGTTCGCAG AAATTGGCGA CTGGATTGAC
GAGCCGATCA AAACCTACTC CTCCGGTATG CGCTCACGGG TTGCGTTTGG CCTGAGCATG
GCATTCGATT TTGATTACTA CCTCATCGAT GAAGTCATGT CGGTTGGGGA CGCACAATTC
AAGCGCAAGT GCGCCGAGGT CTTCCAAGAA AAGCTGCAAA AATCAAACGT TGTGCTGGTC
ACTCACACAA TGTCCGAGGT CGAAAAACTC TGCGACATAG TCCTTCTGGT GAGAAATGGC
AGCATCCAGG TTTACGACGA CGTCGCTGAA GGCATCAAAG CCTACAACAG CTGA
|
|---|
| Protein sequence | MFELRNVTKS YLTPNGRRYV FRNLSLAIPP GKNIGLIGRN GAGKSTLMRL LGGADVPDSG
TIATDRSISW PVGLTGGFQG SMTGRDNIKF VCRVYGATGE AMREKIRYVQ EFAEIGDWID
EPIKTYSSGM RSRVAFGLSM AFDFDYYLID EVMSVGDAQF KRKCAEVFQE KLQKSNVVLV
THTMSEVEKL CDIVLLVRNG SIQVYDDVAE GIKAYNS
|
|---|
| |