Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3847 |
Symbol | |
ID | 5190760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4327315 |
End bp | 4328994 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640588319 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001269155 |
Protein GI | 148549053 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.460611 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.310213 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAGG AAACCGGCGG CTTCGCCGCT CTCGATCTTA ACCCGAACAT TGTTGCTGCC GTTGTGGCTA CCGGCTACGA AGAGCCGTCC GCCATTCAGC AACAATCGAT CCCGATCATC CTCGCCGGTC ACGACATGAT CGGCCAGGCG CAGACTGGCA CCGGCAAAAC CGCTGCCTTC GCCCTGCCGA TCCTGAACAA GATCGATGTG AGCAAGCGCG AACCGCAAGC CCTGATCCTG GCGCCAACCC GTGAGTTGGC GCTGCAAGTT GCTACCGCTT TCGAAACCTA CGCCAAGCAG ATGCCGGGCG TGAACGTTGT CGCCGTCTAC GGTGGTGCCC CGATGGGCCC ACAGCTGCGT GCGATCCGCA ACGGCGCGCA AATCGTCGTG GCCACCCCGG GCCGTCTGTG CGACCACCTG CGTCGTGACG AAAAAGTCTT GTCGACCGTA CAGTACCTGG TACTGGACGA AGCCGACGAG ATGCTGAAGC TGGGCTTCAT GGACGACCTC GAAGTGATCT TCGACGCAAT CCCGGCTACC CGTCAGACCG TACTGTTCTC CGCTACCCTG CCGTCGTCGA TCCGTTCGAT CGCCGAGCGT CACCTGCGTG AACCCAAGCA CGTCAAGATC CAGACCAAGA CCCAGACCGT TACCGCGATC GAGCAGGCCC ACCTGATGGT CCACGCGGAC CAGAAGATCC CGGCTGTGCT GCGTCTGCTG GAAGTGGAAG AGTTCGACGC GCTGATCGCC TTCGTGCGTA CCAAGCAAGC CACCCTGGAC CTGGCCGCCG CGCTGGAAGC CAAAGGCTAC AAGGCTGCTG CACTGAACGG CGATATCGCC CAGAACCAGC GTGAGCGCGT GATCGACTCG CTCAAGGATG GCCGCCTGGA CATCGTCGTC GCCACCGACG TCGCTGCCCG TGGCCTGGAC GTACCGCGCA TCACTCACGT GTTCAACGTT GACATGCCGT ACGACCCGGA ATCCTACGTA CACCGTATCG GCCGTACTGG CCGTGCCGGT CGCGATGGCC GTGCACTGTT GCTGGTTACC CCGCGTGAGC GCCGCATGCT GCAGGTGATC GAGCGTGTTA CCGGGCAGAA GGTTGCCGAA GCGCGCCTGC CGAATGCCCA GGCCGTGCTG GATGCCCGCA TCAAGAAGCT GACCTCGAGC CTGGCGCCGC TGGTAGCCGA AGCAGAAGCC ACCCACGGCG AGCTGTTCGA CCGCCTGACC ACAGACCTCG GTTGCAGCGC GCGTGCTCTG GCTTCGGCCC TGCTGCGCAA GGCCACCAAT GGCCAGGCGC TGGACCTGGC GGCGGTAGAG CGCGAGCAGC CACTGGTGCC GAGCTTCGCC CCGCGTGGTG AGCGTACCGA GCGCGGTGAG CGTGGCGAGC GTCCTGACCG TGGTGATCGT GAGCGCCGTG CACCGCTGCC GTTGGCCGAA GGCCGCGTGC GTTGCCGTAC CGCCCTGGGT GCCCGTGATG GCATCGCTGC CAAGAACCTG CTGGGGGCGA TCCTCAACGA AGGTGGCCTG GCGCGTGACG CTATCGGCCG CATCCAGGTG CGCGACAGCT TCAGCCTGGT CGAGCTGCCG GAAGACGGCC TCGAGAAGCT GCTGTCCAAG CTCAAGGACA CCCGCGTGGC TGGCAAGCAG CTGAAGCTGC GTCGCTACCG CGAGGATTGA
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Protein sequence | MTQETGGFAA LDLNPNIVAA VVATGYEEPS AIQQQSIPII LAGHDMIGQA QTGTGKTAAF ALPILNKIDV SKREPQALIL APTRELALQV ATAFETYAKQ MPGVNVVAVY GGAPMGPQLR AIRNGAQIVV ATPGRLCDHL RRDEKVLSTV QYLVLDEADE MLKLGFMDDL EVIFDAIPAT RQTVLFSATL PSSIRSIAER HLREPKHVKI QTKTQTVTAI EQAHLMVHAD QKIPAVLRLL EVEEFDALIA FVRTKQATLD LAAALEAKGY KAAALNGDIA QNQRERVIDS LKDGRLDIVV ATDVAARGLD VPRITHVFNV DMPYDPESYV HRIGRTGRAG RDGRALLLVT PRERRMLQVI ERVTGQKVAE ARLPNAQAVL DARIKKLTSS LAPLVAEAEA THGELFDRLT TDLGCSARAL ASALLRKATN GQALDLAAVE REQPLVPSFA PRGERTERGE RGERPDRGDR ERRAPLPLAE GRVRCRTALG ARDGIAAKNL LGAILNEGGL ARDAIGRIQV RDSFSLVELP EDGLEKLLSK LKDTRVAGKQ LKLRRYRED
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