| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3827 |
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| Symbol | |
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| ID | 5192734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4290568 |
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| End bp | 4292763 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640588294 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001269135 |
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| Protein GI | 148549033 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGATTG TGAAAAAACA ACGCGGGGGG CCGTTGGTGC GGGCCAAGGT GGTCATGTCT
GCGCTTATGA TGCTAAGCCC AATTGCCCAA GCGTTGACGA CCGTGGATGG CGACCTGACC
ATCGATGCGA ATACACCACT CGATAACTAT CAACTAAACC CAGGGGCCAG GCTTGACGCC
AACGGTGCAT CCACCCAGCA CATCGATATT TTTGGCGGTG CGCACCTGGA GATGAGCGGC
AGCACGGTGG ATGCGCAACT GGACGATGGC ATCGCCCTGC GGGGCGGTTC GAGCGCAAAC
GTAACTGCCA ATTCGCGGGT GGTCAGCGCC CGCTATGGTC TGCGCTTGCA GCACGACAAC
AGCCTGGGTG GCTCAACGGC CACCGTCAGT GACAGTTATG TCGAAGGCGC CAGGGGGGGC
GCGCTGATAT CGGACGAGTC GACCCTGGTA CTGCACAACA GTACACTGGT CGGTACCGGC
ACGGCCGCAG CTGCGGACAT GTTTGACAAC GCAACGCTCA GCGCGGAAGG CAGCCGTTTG
CAGGGTGCAC GGAATGGCTT GCGGATATTG TCTGCGCAGG CACAGCCTGG CACTGCAACG
GTGAGCCTGG TGGGGTCGCA CGTAGAGGGG CAGGACGGCT CTGCGATTGT GGTCGGCAAC
CCCGCGCTTG GCCCGGCTGA GGCCGATATC CTCGTAGCCG GAGGAAGCAC CTTGCAAGGC
AGCAACGGCA CGCTGCTGGA GGTCATGGGC AGTTCCACGG CGCGCATGAC GGTGGACAAC
AGCCAGCTGG TGGGTGACGT GCGTGTCGAA GAGGGCTCCA GCGCCTCGCT GACGCTGGAC
AACCACGCCA GCCTGACAGG CCGACTGGAG AACGTAGCAG GCCTGACCTT GAGCAACCAG
GCGCGCTGGA ACATGGTCGA GGACAGCAAG GTCGGCAGCT TGGCCCTTGA GGGTGGCAGT
GTCAGGTTTG GTGAGCCGGG CCAGTATCAG CGCTTGAGCG TGGGGACGCT GGCTGGCAGT
GGCAACTTCA TCATGGACGC CGACTTCAGT ACCGGCGATA GCGATTACCT TGAAATCACC
GGTACCGCCA CCGGCAGCCA TACCTTGCTG GTTGGCAGCA GTGGTGCCGA TCCTGTAGCT
GAAAACCAAC TGCACCTGGT GCATGCCGCT GCAGGCGATG CGCAGTTTTC CTTGCTCAAC
GGCCCAGTCG ACGTGGGCAC GTTCTCCTAC GAACTGGTGC AGCGTGGCAA CGACTGGTTC
CTCGACGGTG CGAGCAAGGT CATCAGCCCC GGCACCGCTT CGGTGCTGGC CCTGTTCAAC
ACCGCGCCGA CCGTATGGTA TGGCGAGCTC ACCACCTTGC GTAGCCGCAT GGGCGAACTG
CGCCTGGACC AAGGCAAGGC GGGTGGCTGG GTCAGGGCAT ATGGCAACAA GTACAACGTT
TCCGATGCAG CGGGCAGTGC ATACCAGCAG GTACAGCAGG GCTTCTCGTT AGGTGCTGAT
ATGCCGCTGC CGCTTGGGGA TGGCCAGTGG CTTCTGGGTG TGATGGCAGG GCACAGCAAT
TCGGACTTGA ACCTGACGCG TGGCGCGTCC GCCGACGTCA AGAGTTATTA CCTGGGGCTG
TATGCCACCT GGCTCGATGC CCAGAGCGGT TACTATCTGG ATGGCGTGGT CAAGCTCAAC
CGCTTTGACA ACTCGTCGGA TATCACAATG AGCGATGGCA AGCGCAGCAA AGGTGATTAC
GACAACTTCG GTGTGGGTGC ATCCCTGGAG TTCGGTCGCC ATCTGGAGCT GGGTAATGAC
TACTTCATCG AGCCCTATAC GCAATGGTCA ATGGTCACCA TCCAAGGCAA ACACTATGAC
CTGGATAACG GTATGCAGGC GCGCGGCGAC GTCACCCGCT CGCTGCTTGG CAAGGCCGGG
GCCACCGTTG GGCGTACCTT CGACCTAGGT GCCGGGCGCA AGGTGCAACC CTACCTGCGC
GCTGCCTACG CACATGAGTT CGTCGACGAC AACCAGGTCA ACGTCAACGA CAACCGGTTT
GACAATGATC TGTCGGGCTC GCGCGGCGAG CTGGGGCTGG GGGTTGCCGT TAGCATGACC
GATCGCCTGC AACTGCACGC CGACTTCGAT TACGCCAACG GTGAAAAGAT CGAGCAGCCC
TGGGGTGCCA ACGTCGGGCT TCACTACAGC TGGTAG
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| Protein sequence | MGIVKKQRGG PLVRAKVVMS ALMMLSPIAQ ALTTVDGDLT IDANTPLDNY QLNPGARLDA
NGASTQHIDI FGGAHLEMSG STVDAQLDDG IALRGGSSAN VTANSRVVSA RYGLRLQHDN
SLGGSTATVS DSYVEGARGG ALISDESTLV LHNSTLVGTG TAAAADMFDN ATLSAEGSRL
QGARNGLRIL SAQAQPGTAT VSLVGSHVEG QDGSAIVVGN PALGPAEADI LVAGGSTLQG
SNGTLLEVMG SSTARMTVDN SQLVGDVRVE EGSSASLTLD NHASLTGRLE NVAGLTLSNQ
ARWNMVEDSK VGSLALEGGS VRFGEPGQYQ RLSVGTLAGS GNFIMDADFS TGDSDYLEIT
GTATGSHTLL VGSSGADPVA ENQLHLVHAA AGDAQFSLLN GPVDVGTFSY ELVQRGNDWF
LDGASKVISP GTASVLALFN TAPTVWYGEL TTLRSRMGEL RLDQGKAGGW VRAYGNKYNV
SDAAGSAYQQ VQQGFSLGAD MPLPLGDGQW LLGVMAGHSN SDLNLTRGAS ADVKSYYLGL
YATWLDAQSG YYLDGVVKLN RFDNSSDITM SDGKRSKGDY DNFGVGASLE FGRHLELGND
YFIEPYTQWS MVTIQGKHYD LDNGMQARGD VTRSLLGKAG ATVGRTFDLG AGRKVQPYLR
AAYAHEFVDD NQVNVNDNRF DNDLSGSRGE LGLGVAVSMT DRLQLHADFD YANGEKIEQP
WGANVGLHYS W
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