| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3796 |
|---|
| Symbol | |
|---|
| ID | 5195316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4258706 |
|---|
| End bp | 4259926 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640588263 |
|---|
| Product | aminodeoxychorismate lyase |
|---|
| Protein accession | YP_001269104 |
|---|
| Protein GI | 148549002 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.77523 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.494507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGACGTA AATTCCTGCT GTTGCTGGAA ATGGGCTTGA TCCTTGCCGG CCTGGCGTTT
GGCTGGTCGG CCTGGAAGGT CAACTCGGTC CTGGAGCAGC CCCTGCACGT CACGCAGGAA
CGCCTGCTAG ATGTGCCCAA TGGCACTAAC CCCAACCGCA TGTTCTACAG CATGCAACGA
GAAGGGTTGC TCGACGATGC CGTCTGGTTG CGTTTGTACT GGCGCTTCAA CATGGCCGGC
ACCCCCTTGC ACACTGGCGA GTACCGTCTT ACCCCTGGCA TGACCGTCGA GCAGTTGTTC
GACGCCTGGC GCCGTGCCGA CGTGGTGCAG TACAACCTCA CCCTGGTCGA AGGCTGGACC
TTCCGCCAGG TGCGTGCGGC CGTGGCCAAG CATGAAAAGA TCAAGCATAC CCTGGACGGC
TTGTCGGATG CCGAGGTCAT GGACAAGCTC GGCCATACCG GTGTATTCCC CGAAGGCCGC
TTCTTCCCCG ACACTTACCG CTTCGTGCGG GGTATGACCG ATGTCGAGTT GCTGCAGCAG
GCCTACATGC GTCTGGACGA AGTGCTGGCC AAGGAGTGGG CCGAGCGCTC CACCGACCTG
CCGTATCGTG ACCCGTACCA GGCGCTGATC ATGGCCTCCC TGGTCGAAAA GGAAACCGGC
ATTCCGCAGG AGCGCGGGCA GATCGCCGGT GTGTTCGTGC GGCGCATGCG CCTGGGTATG
ATGCTGCAGA CCGACCCGAC GGTTATCTAT GGCATGGGTG AACGCTACAA CGGCAAGATC
ACCCGCGCCG ACCTGCGCGA GCCAACGCCC TACAACACTT ACACCATGAC TGGGCTGCCA
CCGACCCCGA TCGCCATGGT CGGCCGCGAG GCGATTCACG CGGCGCTGAA CCCGTCCAAT
GGCACCAGCC TTTACTTCGT CGCCCGCGGC GATGGCAGCC ATGTGTTTTC CGACGACCTC
GACGACCACA ATTCGGCAGT GCGCGAGTTC CAGCTCAAGC GCCGGTCGGA CTACCGCTCC
AGTCCTGCGC CGCAGCAAGA GGCCAAGCCA AGGGCCGATG ATGCCGAACA GGCGTCGGGC
GCCGACGATG CGCAGCACCC TGAGCCCCCA GCAGCGGACG AGCCAACTGC GCAGCCAGCC
CCCGATGAAG CGCCCGCGCA GGATGCCCCT GCTGGCGGTG CACAAGCGGC CGAGCGGCCG
ACGCCTGACG AACAACATTA A
|
|---|
| Protein sequence | MRRKFLLLLE MGLILAGLAF GWSAWKVNSV LEQPLHVTQE RLLDVPNGTN PNRMFYSMQR
EGLLDDAVWL RLYWRFNMAG TPLHTGEYRL TPGMTVEQLF DAWRRADVVQ YNLTLVEGWT
FRQVRAAVAK HEKIKHTLDG LSDAEVMDKL GHTGVFPEGR FFPDTYRFVR GMTDVELLQQ
AYMRLDEVLA KEWAERSTDL PYRDPYQALI MASLVEKETG IPQERGQIAG VFVRRMRLGM
MLQTDPTVIY GMGERYNGKI TRADLREPTP YNTYTMTGLP PTPIAMVGRE AIHAALNPSN
GTSLYFVARG DGSHVFSDDL DDHNSAVREF QLKRRSDYRS SPAPQQEAKP RADDAEQASG
ADDAQHPEPP AADEPTAQPA PDEAPAQDAP AGGAQAAERP TPDEQH
|
|---|
| |