Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3785 |
Symbol | |
ID | 5195394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4246077 |
End bp | 4247627 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640588251 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001269093 |
Protein GI | 148548991 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0929459 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.428314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGGTG ACCAACTGCT GCGCCCCACG GCGGAGCCAA CCCGACGCGA CTGGATCGCG GTGATGAGCG TGATGCTCGG TGCCTTCATG GCAGTGCTGG ATATCCAGAT CACCAATTCC TCGTTGAAGG ACATCCAGGG CGCTCTGTCG GCGACCCTGG AAGAAGGCTC ATGGATTTCA ACCTCCTACC TGGTGGCGGA AATCATCATG ATCCCGCTGA CGGCCTGGCT GGTGCAGCTG TTGTCGGCGC GGCGCCTGGC GGTATGGGTA TCCGGCGGTT TCCTGCTGTC GTCGCTGCTG TGCTCGATGG CCTGGAACCT GGAGAGCATG ATCCTGTTCC GCGCCTTGCA GGGTTTCACC GGTGGCGCGC TGATCCCGCT GGCCTTCACC CTGACGCTGA TCAAGCTGCC CGAGCACCAC CGTGCCAAAG GCATGGCGAT GTTCGCCATG ACCGCCACTT TTGCCCCCTC CATCGGCCCC ACCCTGGGCG GCTGGCTGAC CGAAAACTGG GGCTGGGAAT ACATCTTCTA CATCAATATC CCACCAGGCC TGCTAATGAT CGCCGGCTTG TTGTATGGGC TTGAGAAGAA GGAGGCGCAC TGGGAGCTGC TGAAAAGTAC CGATTACGCC GGCATCGTCA CGCTCGGCCT TGGGTTGGGC TGCCTGCAGG TGTTTCTCGA GGAAGGCCAT CGCAAGGACT GGCTGGAGTC ACACCTGATC GTCGGCCTGG GCAGTGTTGC CCTGGTCAGC CTGATCACCT TCGTCATCCT GCAGTTTTCC AAGCCTCACC CGCTAATCAA CCTGCGCATC CTCGGCAACC GCAACTTTGG CCTGTCGAGC ATCGCCAGCC TGGGCATGGG CGTGGGCCTG TACGGCTCGA TCTATCTGCT ACCGCTGTAC CTGGCGCAGG TACAGGGTTA CAACGCCTTG CAGATTGGCG AGGTGATCAT GTGGATGGGT ATTCCGCAGT TGTTCCTGAT CCCGCTGGTG CCGCAACTGA TGAAGGTGAT ATCGCCCAAG GTACTATGCG CGCTGGGTTT TTGCCTGTTC GGCGCTGCCA GTTTCGGTTC GGGGGTGCTC AACCCGGACT TTGCCGGGCC GCAGTTCAAC CATATCCAGA TCATCCGCGC CCTGGGTCAA CCGATGATCA TGGTGACCAT CTCTCTGATT GCCACCGCGT ATATCCAACA ACAGGATGCA GGGTCCGCGT CGAGCCTGTT CAATATTCTG CGTAACCTCG GTGGCGCGAT TGGTATTGCC TTGCTGGCCA CCCTGCTGGA TGCGCGCACC AAGGTGTACT TCGACTACCT GCGGGAGGCG GTGGTGCCGA GCAACCCGCA GGTGGCTGAG CGGCTGGCGC AACTGGCGGA GCGCTTGGGC AATGACAATG CGGCGCTGGG CAAACTTAGC GAGATTACCC ACCAGCAGGC ACTGATCATG GCTTACAACG ATGCCTTCCA CTTTGTCGGG ATCGGGTTGG CGGTGAGCAT GGTGGCGGTG TTGCTGACCC GCAAGTTGCC GGAGGGGCTG AAGGCTGGGG AAGCCCATTG A
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Protein sequence | MAGDQLLRPT AEPTRRDWIA VMSVMLGAFM AVLDIQITNS SLKDIQGALS ATLEEGSWIS TSYLVAEIIM IPLTAWLVQL LSARRLAVWV SGGFLLSSLL CSMAWNLESM ILFRALQGFT GGALIPLAFT LTLIKLPEHH RAKGMAMFAM TATFAPSIGP TLGGWLTENW GWEYIFYINI PPGLLMIAGL LYGLEKKEAH WELLKSTDYA GIVTLGLGLG CLQVFLEEGH RKDWLESHLI VGLGSVALVS LITFVILQFS KPHPLINLRI LGNRNFGLSS IASLGMGVGL YGSIYLLPLY LAQVQGYNAL QIGEVIMWMG IPQLFLIPLV PQLMKVISPK VLCALGFCLF GAASFGSGVL NPDFAGPQFN HIQIIRALGQ PMIMVTISLI ATAYIQQQDA GSASSLFNIL RNLGGAIGIA LLATLLDART KVYFDYLREA VVPSNPQVAE RLAQLAERLG NDNAALGKLS EITHQQALIM AYNDAFHFVG IGLAVSMVAV LLTRKLPEGL KAGEAH
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