Gene Pput_3784 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3784 
Symbol 
ID5195225 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4244924 
End bp4246087 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content65% 
IMG OID640588250 
Productsecretion protein HlyD family protein 
Protein accessionYP_001269092 
Protein GI148548990 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.52274 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.687731 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAGCAG GAGGCGGGCA CCGGGCTCCA GCAATGGCGC GAACGTCACT TGTCGACAGG 
CCCGGTGCCG CTGTTAAATT TGTTTACATT TCTGGAACGA TAGTCCCCAT GCCTGCCCAA
CTCAAACGCC GCCTGACGCT CTTCTTCGCC CTGGTGGCCA TCATCGCCCT CGCCTTCCTG
GGCCACTGGT ACTTCAAGGG CCGCTTCTAC GAGAGCACCG ACAACGCTTA CGTGCAGGGT
GAGATCACCC GTATCTCCAG CCAGCTTGGC GCACGTATCG AAACGGTACC GGTCGAGGAC
AACCAGCACG TCAGCAAGGG CGACCTGCTG GTGCGCCTGG AAGCCGCCGA CTTTGAGCTG
GCGGTCGAAC GCGCCCGTGC CGCGCTGGCC ACCCGCGAAG CCGAGTACGC ACAAGCGCAA
AGCCGCCTCA CCCAACAAGG CAGCCTGATT GCCGCCGGCC AGGCCCAGTT GGCGGCCACC
CAGGCCACGT TCGACCGTTC ACGGCTGGAC CTGAGCCGTG CCGAGAAGCT GCGCAAGCCG
GGTTTTGTCT CTGAGGAGCG GGTCACTACC CTGTCGGCGG ACAGCCATGT CGCCGGTTCC
CAGGTCGACA AGGCCCGCGC CGACCTGCAA AGCCAGCGCC AGCAGGTCAC CGCCCTGAAC
GCCGAACTCA AGCGCCTCGA TGCGCAAATC GCCAATGCCC GCACCGACCT GGCCCAGGCC
GAACTGAACC TGACCCGCTG CGAAATCCAT GCGCCGATCA GCGGCACCAT TGGCCAGCGT
AATGCGCGCA ATGGCCAAGT GGTGCAGGCC GGCGCCTACC TGCTGTCGAT CGTGCCGGAT
GAAGACATCT GGGTGCAGGC CAACTTCAAG GAAACCCAGA TCGGCCGCAT GCACCCCGGC
CAGCGCGCGG AGCTGTTGTT CGACAGCTAC CCCGACACAC CGATCGAAGG CCGGGTGGAC
AGCCTGTTCG CCGCGTCCGG TGCGCAGTTC AGCCTGCTGC CACCGGACAA CGCCACCGGC
AATTTCACCA AAGTTGTGCA GCGCATCCCG ATAAAACTCA CGTTCAGCGC CGACAACCCG
TTGCACGGGC GTATTCGCCC CGGCATGTCG GTGACCGCCA CCGTCGACCT GCGCAGCGCA
GACGAAGGCC ACAATGGCCG GTGA
 
Protein sequence
MLAGGGHRAP AMARTSLVDR PGAAVKFVYI SGTIVPMPAQ LKRRLTLFFA LVAIIALAFL 
GHWYFKGRFY ESTDNAYVQG EITRISSQLG ARIETVPVED NQHVSKGDLL VRLEAADFEL
AVERARAALA TREAEYAQAQ SRLTQQGSLI AAGQAQLAAT QATFDRSRLD LSRAEKLRKP
GFVSEERVTT LSADSHVAGS QVDKARADLQ SQRQQVTALN AELKRLDAQI ANARTDLAQA
ELNLTRCEIH APISGTIGQR NARNGQVVQA GAYLLSIVPD EDIWVQANFK ETQIGRMHPG
QRAELLFDSY PDTPIEGRVD SLFAASGAQF SLLPPDNATG NFTKVVQRIP IKLTFSADNP
LHGRIRPGMS VTATVDLRSA DEGHNGR