| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3782 |
|---|
| Symbol | |
|---|
| ID | 5194543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4241628 |
|---|
| End bp | 4242167 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640588242 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001269090 |
|---|
| Protein GI | 148548988 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.59056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.419733 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACA AGAAGAGCAA AACCCGCGAA CGCATTCTGG AAGCTGCGCG CAGTGCGCTG
ATCCAGCACG GCCCGGCCGA GCCCAGCGTC AGCCAGGTGA TGGGTGCGGC AGGCCTGACC
GTCGGCGGCT TCTATGCGCA CTTCGACAGC AAGGATGAGC TGATGCTCGA GGCGTTCCGC
CAGTTGTTGG GTGAGCGCCG TGCCTTGCTC GCTCAGGTCG ACCCCAATCT CGATGGCGCC
GGGCGGCGAG CGCTGGCCGG GGCCTTCTAC CTCTCGCGCA AGCACCGGGA CTGCGAAGTA
CATGCTTGCC CGCTGCCTAA CGCGTTGGGC GAAATGCAGC GCCTGCCGGA GGTCTTCCGC
GAGGTGCTGG CCGAGCACAT CGAGTTGATG ACTGCCGCGA TGGTCGACCG CCCTGAGGAT
GCCGACAAAG CGCTGGCCGA CCTGGCCCTG ATGGTGGGAG GGCTGGCGCT GGCCCGGGCC
TTGGGGACCA GTGACCTGTC TGACCGTATT CTGCGCGCCG CCAAATCGGC GGTGCTTTAA
|
|---|
| Protein sequence | MSDKKSKTRE RILEAARSAL IQHGPAEPSV SQVMGAAGLT VGGFYAHFDS KDELMLEAFR
QLLGERRALL AQVDPNLDGA GRRALAGAFY LSRKHRDCEV HACPLPNALG EMQRLPEVFR
EVLAEHIELM TAAMVDRPED ADKALADLAL MVGGLALARA LGTSDLSDRI LRAAKSAVL
|
|---|
| |