| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3779 |
|---|
| Symbol | |
|---|
| ID | 5194203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4239173 |
|---|
| End bp | 4240144 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640588239 |
|---|
| Product | dihydrouridine synthase, DuS |
|---|
| Protein accession | YP_001269087 |
|---|
| Protein GI | 148548985 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.605744 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATTG CCCTGGCCCC CATGGAGGGG CTGGTCGACA ACATCCTGCG CGACGTATTG
ACCCGTGTGG GCGGTATCGA CTGGTGCGTC ACCGAGTTCA TTCGCGTGTG CGACCGCCTG
CTGCCGGCGT CCTCGTTCGA CAAGCTGGCG CCTGAACTGC GTCAGGGCGC GCGCACGGCT
TCCGGTGTGC CCATGCGCGT GCAATTGCTG GGTTCGGACC CGGTATGCCT GGCGGAAAAC
GCCGCACTGG CTTGCGAGCT TGGGGCGCCG GTGATCGACC TGAACTTCGG TTGCCCGGCA
AAGACGGTGA ACAAGTCGCG CGGTGGCGCG GTACTGCTCA AAGAGCCGGA GTTGCTGCAC
GCCATTGTGC GTGAAGTGCG GCGTGCGGTG CCGGCGAACA TTCCGGTGAC CTCGAAGATG
CGTCTGGGCT TCGACAGCCC CGATGGGGCA CTGGAGTGCG CCACGGCGCT GGCCGAGGGC
GGTTCGGCAC ACCTGGTGGT GCACGCACGG ACCAAGGTTG AGGGCTACAA GCCGCCAGCG
CACTGGGAGT GGGTGGCGCG GGTGCAGGAT GTGGTCAAGG TGCCGGTGTT TGCCAATGGC
GAGATCTGGA CGGTCAATGA CTGGCGGCGT TGCCGCGAGG TCAGTGGCGC TGAAGACATC
ATGCTCGGGC GTGGGCTGGT ATCGCGCCCG GACCTGGGCC TGCAGATTGC AGCGGCGCGG
GACGGGCGCG ACTATCAGCC GATGAGCTGG CATGAATTGT TGCCACTGTT GCGTGAGTTC
TGGCGCCAGG CCCAGGCCAA ATTGTCGCCG CGTTATGCGC CGGGGCGGAT GAAGCAGTGG
CTGGCGATGC TGACTCGCAG TTACCCCGAA GCGGTGGTGT TGTTTGCCGA GTTGCGCCGG
GAAGATGACT GCGCGCGGAT CAGCCGGTTG CTGGGGGTTG AGGCGCAAGC GTTGGAGGCT
TGCGTCGCCT GA
|
|---|
| Protein sequence | MQIALAPMEG LVDNILRDVL TRVGGIDWCV TEFIRVCDRL LPASSFDKLA PELRQGARTA
SGVPMRVQLL GSDPVCLAEN AALACELGAP VIDLNFGCPA KTVNKSRGGA VLLKEPELLH
AIVREVRRAV PANIPVTSKM RLGFDSPDGA LECATALAEG GSAHLVVHAR TKVEGYKPPA
HWEWVARVQD VVKVPVFANG EIWTVNDWRR CREVSGAEDI MLGRGLVSRP DLGLQIAAAR
DGRDYQPMSW HELLPLLREF WRQAQAKLSP RYAPGRMKQW LAMLTRSYPE AVVLFAELRR
EDDCARISRL LGVEAQALEA CVA
|
|---|
| |