| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3776 |
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| Symbol | |
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| ID | 5194347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4234463 |
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| End bp | 4237759 |
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| Gene Length | 3297 bp |
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| Protein Length | 1098 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640588236 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001269084 |
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| Protein GI | 148548982 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAT CAGCAAACCG CTTTTTGCGC CTGCCGCGAA TACCTGCCGC TGATCCCCAG
GAGTCCGAGC AGGCCTGGCA GAACGCCCCG CAACTGCTGG CAGCGCTCAA CGGTGCGCGC
CTGGGTGCCT GGCTATGGGA TATCGAAAGC GGCAGGGTCA GTTGGTCGCG GGGCACCCAG
GCCCTGTTCG GTTTCGATCC ACAACGGCCA CTGCCCGCCG ATATCGATTA CCTCGACCTG
CTGCCCGAGG AGGACCGCGC CCGCACGCGT CAGGTGTTCC AGGCGGTGGT CAATGGCGAG
CCGGTGGAGC AAGCCATGCG CCACCGTATC CGCTGGCCGG ACGGCAGCCT GCACTGGCTG
GAGATCAACG GCAGCCTGAC CCACGACCCG CACGGCCGAC CGCAGATGAT CGGCGTGATC
CGCGAGATCA CCCGCCAGCG CGAACGGGAA ACAGCACTGA TCAATTCGGA AAAGCGCTTC
GCCACGCTGT TCCACCTGAG CCCCAACGCC ATTTTGCTGA CCCGTCGCCA CGATGGCATG
ATCTTCGAGG TCAACCAGCA CTTCGAAAAC ATGTTCGGCT GGCCCGGCAG CCAGGTGATC
GGCAAGACCA GCCTGGAACT GGGCCTGTGG GTCAACCCCG AACAGCGCCA CCAGATCATG
GAGTCGACCC GCGCCAACGG CGGCCCGTTG ATCATGGAGG TGCAATTTCG CGCGACCAGC
GGCAAGGTGC ATGACGGCAT CCTGTGCACC CAGGGCATCG AGCTGGAAGG CGTGACCTTC
CTGATCAGTA CATTCGTCGA CACCACCGAA CGCAAGCGTG CCGAGCAGGC CCTGAAGGAC
AGCCAGGAGC GGCTGGACCT GGCCCTGGAC TCGGCGCAAC TGGGCACATG GGACTGGCAC
ATCCCAAGCG GCATGCTCTA CGGCTCAGCC CGCGCGGCGC AGCTGCATGG CTTGCCGCCC
ATCCCTTTTC ATGAATCGTT CGATGCGTTC TTCGAAGGTG TGCCGGAGCA AGAGCGCAAC
TCGATGCGAC AGGCCTACCG CAGCCTGCGC GAAGGGCCTG CCGGCAACTA TCAGATCACC
TACCGGGTGC AGTTGGAAAA CGGCACTTCA CGCTACATCG AAAGCCGCGC GCGGCTGTAC
CGCGACGACC AGGGCATCCC CCTGCGCATG GCGGGCACCT TGCTCGACAT CACCGATCAG
GTGGAGCGCG AACAGCGCCT GAGCGCCTCG GAAGAGAAGT TTGCCAGCCT GTTCCAGGTC
AGCCCCGACC CGATCTGCGT CACCCGCCAG GACACTGGCC AGTTCATCGA GATCAATCCG
GCGTTCACCC AGACCTTCGG CTGGAGCAGC GAGCAGGTGC TTGGGCGTAC CGCAGAGGAG
ATCGGCCTGT GGGCCGAGTC CGTCGAGCGC GCCAAACGTA TCGAGCAGGT GATCCGCGAA
CAGGCCTTGA GCAACGTCGC CGTGGTACTC AACCACCGCA ATGGCGCCCC GATGACCTGT
GTGATTTCCA GCCGCCTGAT CACCGTCGAC GACCAGCCCT GCAGCGTGAC CACCCTGCGC
GACATCACCC AGCAACAACG CGCCGAAGCC GCGCTGAAGT CCAGCGAGGA GAAGTTCGCC
AAGGCCTTCC ACTCCAGCCC CGATGCCATC ACCATCACCG AACGCCACAG CGGCCGCTAC
CTGGAGATCA ACGACGGCTT CTGCCGCCTG ACCGGCTACA GCACTGCCGA CGTGATCGGC
CACACGGTGT ATGAGATCGG CATCTGGGCC GACGACAAGC AGCGCAGCGC GCTGCTGGCC
GAATTGCACG AGCGCGGCCG GGTACACCAC CGCGAGATGC TCGGGCGCAA CAAGCGTGGC
GATATCCTCA CGGTCGAGGT TTCGGTGGAA CCGATCACCC TCAACGAAGT GGATTGCCTG
CTGCTGACCG CCCGCGACGT CAGCCAGCTG AAGAACGCCC AGGCGCAGAT ACGCCACCTG
GCCTATCACG ACCCGCTGAC CAACCTGCCC AACCGCGCCT TGCTGATGGA CCGCCTGAGC
CAGCAGATCG CCCTGCTCAA GCGTCATAAC CTGCGTGGCG CCCTGCTGTT CCTCGACCTC
GACCACTTCA AGCACATCAA CGATTCGCTG GGCCACCCGG TGGGCGACAC TGTGCTGAAG
ATCATCACCG CCCGCCTTGA GGCCAGCGTG CGCCTGGAGG ACACCGTGGC GCGTCTGGGG
GGCGACGAAT TCGTGGTGCT GCTCAGCGGC CTGGAAGGGA GTCGCGAACA CGTGGAGGAG
AAAGTGCGCG AGCTGGCCGA CACCCTGCGC GAACTGCTGG CCGAGCCAAT GTCACTGGAT
GGCCAGCGCC TGCAGGTAAC GCCCAGCATC GGCGTGGCGC TGATCCCCGA CCACGGCACC
ACACCGGCCG ACCTGCTTAA ACGTGCCGAT ATCGCCCTGT ACCGGGCCAA GGACTCCGGT
CGCAACACCA CACAGCTGTT CCACACCACC ATGCAGAAGG CCGCCAGCGA GCGCCTGCGC
ATGGAAAACG ACCTGCGCCT GGCCCTGGCC CGTGGCGAAC TGGCGCTGCA CTTCCAGCCG
CAGGTGGATG CCCGCGACAA CCGCATCGTC GGTGCTGAAG TATTGCTGCG CTGGCACCAC
CCGCTACTGG GCCAGCAACC GCCCTCGCAG TTCATTCAGG TACTGGAAGA AAGCGGCCTG
ATCCTGGAAG TTGGCAGCTG GATTCTCGAC GAAGCCTGCG ACGCCTGCGC CCGTATGCTC
ACCGACGGGT TGATCGACGC TGATGATTTC AGCCTGTGCG TGAACATAAG CCCGCGACAG
TTCCGCCAGA ACGACTTTGT CGGGCGGGTG CTGCGCAGCC TGGACGATTA CCGCCTGCCG
CGGCAGATGC TGACGCTGGA AATCACGGAA GGCATCGTCA TCCAGAACCT GGAAGACACC
ATCAGCAAGA TGCGCGAGCT GAAGCGCTAC GGGGTGAGTT TTGCCATGGA TGACTTCGGC
ACCGGCTATT CCTCGCTGAC TTACCTGAAG CGCCTGCCGG TCGATGCGCT GAAGATCGAC
CAGAGCTTCG TGCGCGATGC ACCGGTCGAC CCCAACGACG CAGAAATTGT CCGCGCCATT
GTCGCCATGG CGCGCAGTCT GGACCTGGCG GTGATTGCCG AAGGGGTAGA GCTGACCGAA
CAGCTGGCGT TTCTCGAGCG GCTGGGGTGC CATCTGTACC AGGGTTATCT GCACAGCCGG
CCATTACCGT TGCTGGAATT TCGGCAGATG TTGCTGGAGG CGCCGGCAGA TTACTGA
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| Protein sequence | MPKSANRFLR LPRIPAADPQ ESEQAWQNAP QLLAALNGAR LGAWLWDIES GRVSWSRGTQ
ALFGFDPQRP LPADIDYLDL LPEEDRARTR QVFQAVVNGE PVEQAMRHRI RWPDGSLHWL
EINGSLTHDP HGRPQMIGVI REITRQRERE TALINSEKRF ATLFHLSPNA ILLTRRHDGM
IFEVNQHFEN MFGWPGSQVI GKTSLELGLW VNPEQRHQIM ESTRANGGPL IMEVQFRATS
GKVHDGILCT QGIELEGVTF LISTFVDTTE RKRAEQALKD SQERLDLALD SAQLGTWDWH
IPSGMLYGSA RAAQLHGLPP IPFHESFDAF FEGVPEQERN SMRQAYRSLR EGPAGNYQIT
YRVQLENGTS RYIESRARLY RDDQGIPLRM AGTLLDITDQ VEREQRLSAS EEKFASLFQV
SPDPICVTRQ DTGQFIEINP AFTQTFGWSS EQVLGRTAEE IGLWAESVER AKRIEQVIRE
QALSNVAVVL NHRNGAPMTC VISSRLITVD DQPCSVTTLR DITQQQRAEA ALKSSEEKFA
KAFHSSPDAI TITERHSGRY LEINDGFCRL TGYSTADVIG HTVYEIGIWA DDKQRSALLA
ELHERGRVHH REMLGRNKRG DILTVEVSVE PITLNEVDCL LLTARDVSQL KNAQAQIRHL
AYHDPLTNLP NRALLMDRLS QQIALLKRHN LRGALLFLDL DHFKHINDSL GHPVGDTVLK
IITARLEASV RLEDTVARLG GDEFVVLLSG LEGSREHVEE KVRELADTLR ELLAEPMSLD
GQRLQVTPSI GVALIPDHGT TPADLLKRAD IALYRAKDSG RNTTQLFHTT MQKAASERLR
MENDLRLALA RGELALHFQP QVDARDNRIV GAEVLLRWHH PLLGQQPPSQ FIQVLEESGL
ILEVGSWILD EACDACARML TDGLIDADDF SLCVNISPRQ FRQNDFVGRV LRSLDDYRLP
RQMLTLEITE GIVIQNLEDT ISKMRELKRY GVSFAMDDFG TGYSSLTYLK RLPVDALKID
QSFVRDAPVD PNDAEIVRAI VAMARSLDLA VIAEGVELTE QLAFLERLGC HLYQGYLHSR
PLPLLEFRQM LLEAPADY
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