| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3768 |
|---|
| Symbol | |
|---|
| ID | 5191646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4223212 |
|---|
| End bp | 4225947 |
|---|
| Gene Length | 2736 bp |
|---|
| Protein Length | 911 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640588228 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_001269076 |
|---|
| Protein GI | 148548974 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.853067 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCGAA TTCGCAAACT GGTTCTGGCC ATGGCTGCAG CATCCGCGCT GTCGTCTGGC
ATGGCGAATG CGCTGGGCCT GGGGGAGCTG ACCCTGAAGT CGGCACAGAA TCAGCCGCTG
GACGCCGAGA TCGAATTGCT CGACGTGCGC GACCTCAAAG CCGCCGAGGT GGCGCCGAGC
CTGGCGCCAC CGGAAGAGTT CAGCAAGGCC GGGGTGGCGT TTCCGACCTA CCTCGAAGAC
CTGACCTTCA CACCGGTAAT CAACCCCAAC GGCAAAAGTG TGCTGCGCGT GACGTCCAGT
CAGCCGCTGC CAGGTCCGGT GGTCAAGTTC CTGGTGCAGG TGATGTGGCC GCAGGGCCGT
CTGCTGCGTG ACTATAGTGT GCTGCTCGAC CAGGCCAAGG CGCAGGGCGA CAAGCCGGCG
GCAGGCAATG TCACACCGGC CATGACCGGT GCCAGCAACT ACACCACCCA GCGTCGCGAC
ACCTTGTGGC AGATTGCTGC GCGTAACACC CAGGGTGGGT CGATCCAGCA GACCATGATC
GCGATCCAGG CATTGAATCC GGACGCCTTC ATCGGCAACA ACATCAACCA GCTGAAGGTT
GGCCAGGTAC TGCGCCTGCC CGACCAGCAG CAGATCCAGA GCATCGCCCA GGGCGAAGCG
AACCGCGAGG TGGCCGAGCA GTATGCGGCC TGGCGTGAAG GCCGTCGCCT GGGGCCGCGT
GCCCGCCAGC TGGATGCCAC CCGCCGTGGC GCCGCCGAAG CTGCACCGTC GCGTATCGCC
CAGGGCGACA ACCTGCGCCT GGTCAGCCCG GGCAAGCAGG CCGGTGCAGG CCAGGCCAAG
GCGTTGAATG ACGAGCTGGC CATGGCCCAG GAAAGCCTGG ACACCAGCCG TCGCGACAAC
GAAGAACTGA AAAGCCGCAT GGCCGACCTG CAGAGTCAGC TGGACAAGCT GCAGCGCCTG
ATCGAGCTGA AGAACAACCA GTTGGCACGC CTGGAAGGCC AGGGCGCAGA CGCATCGGCA
GCGGCTGCCG CTACTCCGGA GCAGCCCGTG GTCAATCCGG CGCCTGCTGC TGCCGATACC
GCACCCAAGC CTGTGCCGGA CGCCCAGCCA GCATCCGCCA GCCAGCCGAA GGGTACGCTC
GATTCGGTCC TGGGCAACCC GTGGCTTTTG GGGGTGATTG CCGGTTCCAG CATCCTGGTG
CTGGCACTGC TGCTGTGGCT GCTGGCGCGC AAGCGCAAAG CCCAGCAAGA AGCCGAGAAG
CACCTGCGCA TGGCGCGGGC GCTGGAAGAA GAGCAGGGCG CAGGTTTCGA CAGCGATACC
GAGAGCTTCG ACGGCGTCGA AGCCCGGGAG CCTGGCGTAA CCCTGTCGCC GGCGGTGGTT
GCCGCTTCGG CTGCAGCTGC CGTCGCTGCG GAAAAAGTGG CAGAACCGGT CGCTGAGGCA
GAACCCGAGC CTGAGCCGCA AGCAGACCCG CACGCCGCGC TGCTGGCGCA AGTTGACCAA
TGCCTGGCCG AAGGCCGCCT TAATCGTGCT ACCGAGCTGT TGGAGCCCGC CGTGGCCGCC
GCGCCGGAGC GTGACGACCT GCGCCTGAAG CTGATGGACG TGTACGCCCG TCAGGGTGAC
CAGAGCGCGT TCGCTGAACA GGAGCGTCAG TTGCCGGCCA GCGAGCAGAA CGTTGCTGAA
GTCGCCAGCC TGAAAGAGCG TTACCCCGCC ATGCTCGGCC TGGCTGCTGC CGGCCTGGGT
GCGGCGGCGC TGGCTGCCGA AATGGATGAG CAGTACGTGC AAGAGCTGCT GCACGATGAG
CCCGAAGCGC CGGTGGTTGC CGATGTGGTG CCTGACGAGT TGTCTGGGTT CGAGCCGCAC
GTGGAGGCTG AGCCAGAGGC TGTCGCGCAA GCAGAGCCTG ACGCTGAGCT GGACGCCTTC
GATGAAGTGC CAACGCTCGA TGCAACGGAC CTGGCCGAGC AGGATCTGGA CAGCGCCTTC
GACCTGAGCC TGGGTGAAGA CCTGGCCGAT CAAGACCCGC TGGCCGCGTC CGTGCTGGAC
GAGCCGATGG CACAGGGGGA CGTACCCGAC GAGCTGGTAA TCGCTGAGCC TGTGCTGGAT
GAGCCCGTAC AGGAAGAAGC TCAGCCAGAA GAACAGCCCT TTGCCGTGGA TGCCGAGCTG
CAAGCCGACG CCGACGCTGA TTTCGAGGCC ATGCTGGCTC AGGCCGAGCC TCAGCCTGCC
GTGGACCTGT CTGATTTCGA CCTTGACGTC AGCGAGCCGG TTGCCCCAGC CGCCCCGGAG
GCGCTGGAGC AAGATCCGCT GGATGTCGCG TCCGAACTGG CTGCCTTCGA CAGCGAACCG
GAGTTTGACC CGGTCTCCGA GTTCGACCTG CCATCGGACT TCGACTTGTC CCTGTCGCTG
GAAGACGATT CGCCGGCCGC CAAGAGCTTT GCCTCGGAGC TCAATGACGT CAACGCCGAG
CTGGACAAGC TGTCGCAGAG CCTCGAAACG CCATCGCTGG AGCCGCACTT CACCAGCGAA
GACGCGGTGG CGCAGCCCGA GCCCGAGCCT TTGGACGACC TGGACTTCGA CTTCTTCTCC
GGCAGTGACG AAGTCGCCAC CAAGCTCGAC CTGGCCCGTG CCTACATCGA CATGGGTGAC
AGCCAGGGCG CGCGTGACAT CCTCGACGAA GTGGTCAAGG ATGGCGACGA CAGCCAGCGT
CAGGAAGCCG AGGACATGCT CTCCCGGCTG GTCTGA
|
|---|
| Protein sequence | MLRIRKLVLA MAAASALSSG MANALGLGEL TLKSAQNQPL DAEIELLDVR DLKAAEVAPS
LAPPEEFSKA GVAFPTYLED LTFTPVINPN GKSVLRVTSS QPLPGPVVKF LVQVMWPQGR
LLRDYSVLLD QAKAQGDKPA AGNVTPAMTG ASNYTTQRRD TLWQIAARNT QGGSIQQTMI
AIQALNPDAF IGNNINQLKV GQVLRLPDQQ QIQSIAQGEA NREVAEQYAA WREGRRLGPR
ARQLDATRRG AAEAAPSRIA QGDNLRLVSP GKQAGAGQAK ALNDELAMAQ ESLDTSRRDN
EELKSRMADL QSQLDKLQRL IELKNNQLAR LEGQGADASA AAAATPEQPV VNPAPAAADT
APKPVPDAQP ASASQPKGTL DSVLGNPWLL GVIAGSSILV LALLLWLLAR KRKAQQEAEK
HLRMARALEE EQGAGFDSDT ESFDGVEARE PGVTLSPAVV AASAAAAVAA EKVAEPVAEA
EPEPEPQADP HAALLAQVDQ CLAEGRLNRA TELLEPAVAA APERDDLRLK LMDVYARQGD
QSAFAEQERQ LPASEQNVAE VASLKERYPA MLGLAAAGLG AAALAAEMDE QYVQELLHDE
PEAPVVADVV PDELSGFEPH VEAEPEAVAQ AEPDAELDAF DEVPTLDATD LAEQDLDSAF
DLSLGEDLAD QDPLAASVLD EPMAQGDVPD ELVIAEPVLD EPVQEEAQPE EQPFAVDAEL
QADADADFEA MLAQAEPQPA VDLSDFDLDV SEPVAPAAPE ALEQDPLDVA SELAAFDSEP
EFDPVSEFDL PSDFDLSLSL EDDSPAAKSF ASELNDVNAE LDKLSQSLET PSLEPHFTSE
DAVAQPEPEP LDDLDFDFFS GSDEVATKLD LARAYIDMGD SQGARDILDE VVKDGDDSQR
QEAEDMLSRL V
|
|---|
| |