| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3652 |
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| Symbol | |
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| ID | 5194834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4082378 |
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| End bp | 4082944 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640588108 |
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| Product | RNA polymerase sigma factor SigX |
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| Protein accession | YP_001268960 |
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| Protein GI | 148548858 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00182973 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.843526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCTATG ACCCCCGCGA GCTCACAGAC GAAGAGTTGG TGGCGCGTTC GCATGAGGAG
CTGTACCACG TTACCCGCGC CTATGAAGAG CTCATGCGGC GCTACCAACG GACCCTGTTC
AACGTCTGTG CGCGTTATCT GGGGAACGAC CGTGACGCGG ACGATGTCTG TCAGGAAGTG
ATGCTGAAAG TGCTGTACGG GCTGAAAAAC TTCGAGGGTA AGTCGAAGTT CAAGACCTGG
CTCTACAGCA TCACCTACAA CGAGTGCATT ACCCAGTACC GCAAGGAGCG CCGCAAACGT
CGGTTGATGG ATGCCTTGAG TCTGGACCCT GTTGAAGAGG CGTCCGAAGA CAAGGCTCCA
AAGCCGGAAG AAAAAGGCGG GCTGGACAAG TGGCTGGTGC ATGTGAACCC GATTGACCGG
GAGATTCTGG TGCTGCGTTT TGTCGCAGAG CTGGAATTTC AGGAAATTGC CGACATCATG
CACATGGGCC TGAGCGCGAC GAAAATGCGT TACAAGCGCG CGCTAGACAA GCTTCGGGAG
AAATTTGCCG GCCTTGATGA AACTTAG
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| Protein sequence | MRYDPRELTD EELVARSHEE LYHVTRAYEE LMRRYQRTLF NVCARYLGND RDADDVCQEV
MLKVLYGLKN FEGKSKFKTW LYSITYNECI TQYRKERRKR RLMDALSLDP VEEASEDKAP
KPEEKGGLDK WLVHVNPIDR EILVLRFVAE LEFQEIADIM HMGLSATKMR YKRALDKLRE
KFAGLDET
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