| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3642 |
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| Symbol | |
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| ID | 5191910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4068721 |
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| End bp | 4071111 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588098 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001268950 |
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| Protein GI | 148548848 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.127426 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.751556 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAGT GTGGCGTGCG TGCGCGGTTG CTTGGCTTGT GCACAGAGAG GGCGTCCGCC
TGGGCGATGG CGCTGATTGC ACTGGTGGCG GGCGGCTTGT TGACCGCCGC CTTGGCATTT
GCCGCGCACA CCTTCTACAA ACAGCAGCTG CGCCAGCGCT TTGAGCTGCT GGCCAGTGAG
CGCGCCAGCC GTATTGCCGA GCGCTTTGAC GAACAGCAGC AGCGCCTGGA TGGGCTGCGG
CGGTTCTTCA GTTTTTCCAA CGACATCAGC CCGCGCGAAT TTGACGGCTA TGCCCGGCCA
CTGCTGCAGC GCACCCTGGC CTATGCCTGG GCGCCGCGCG TCGAGGCTGC GCAACGCGCC
GAATTCGAGC GCCTGGCCAG TGCCCATACC GGCCCAGGCT ACGTGATCCG GGACAAGGAC
GCGCAAGGCC AGTGGCGCCC GGCGTCGCAG CGCGACCATT ACTTCCCGGT ACTCTATACC
CAATCGGGCG AACTGCCCGG GTTGCCCTAC GGCCTGGACC TCGCTGGCCG AAGCGAGCCT
CAGGCGGCCT TGGCGCGGGC GTTGGGGCCA GGCAGCATGG CGGTGTCCGA GCCATTGGCC
CTGTTCGATA CCCACTCGGC AGAGCGCGGC CTGTTGATGG TCGCGCCGGT ATTTTCCGAT
GCCGACCCCC GCGGTGCTGC AGCGGGTTAT GTGGTGGCCT TGCTGAGCAT GCGCGAGCTG
GTCAGCGACG GTCGGCCGGT AGCGACTGAT GACAACCTTG TCGTGCGCAT CACGGACCCG
TCTGGGTTAC AAGGCCCCGT CGTGATGTTC GATTCGCAAA ATCAGGTCGC GCCCTTGGCC
TTGGCCAGCA ATCAGTTGTT GCGCCTGGCC GATCACTATT TCCAGCTGAG CATTCAGCCG
AGCCAGGCGT TCGTGCAGGC GAACCGCTCC TCGGCAGTGC TGGCGGTCGG TTTGTTGGGC
GGACTGTTGA GCCTGTTGCT CAGCGTGCTG CTCTACAGCC TGTTGAGCCA GCGTCAGCGC
GCCCTGGCCT TGGTCGCTCA GCGTACGGCC GAGTTGCAGG TCAGCGAGCA GTCGTTGCGT
GGCACCCACA ACCAACTGCG CAGTGTGCTG GATGCCGCGA CCCAGGTGGC GATCATCGCC
ACCAACCTCA AGGGGGTGGT CAGCACGTTC AACGCCGGTG CCGAACGCAT GCTCGGTTAC
GCGGCCAGCG AAGCGATCGG CCGCTTGCGC CTTGAAGACC TGGTGCTGCC GGAGGAGCTG
AACCTGCGTG CGCATGCCTT GAGCTTGCGT TTTGGCCGCG CCATTGCTGG GGGCCAGGCG
ATGTTCGCTG AAACGGTGCA GGAGCACGGT GCCGAGCCTG GCGAGTGGAC CTTGCTACGG
GCTGATGGCA GCCAGCTGGT CGCCAACATG CTGGTGACTG CCATGCTCGA CGAACAGGGG
TTGTGGGTTG GCTACCTGGC CATCTGCATT GACGTGACCG AGCGGCGCCG GGTGCATGAG
GCGTTGGCAG CGCGTGACCG GTTGCTGGAA AAGCTCAGTG CCGAGGTGCC GGGCGGCATC
TACCAATATC GCCTGGATGC CAACGGCCAT TCGTGTTTTC CCTATGCCAG CATGGGCCTG
TATGACATTT ATGAGGTCGA CCTCATGCAA TTGCGTGAGG ATGCCTCGGG GGTGTTCGAA
CGTATCCACC CCGATGACCT GGAACGCGTG CGCCGCTCGG TGTGCTATTC GGCCGAACAC
CTGTCACCCT GGCGCGAGGA GTATCGGGTC TGCCTGCCAC GGGCCGGACT GCGCTGGGTG
CGTGGCGAGG CGACCCCGGA AGTGGGCGAG CAGGGCTGCA CCCTGTGGCA TGGCTACCTG
ACTGACATCT CCGACCTGAA GGGCGTGGAG GAAGAGTTGC GGGCGCTGTC GGTCACCGAC
TCGCTGACCG GTATCCATAA CCGTCGCTAT TTCCAGGAGC GGCTCAAGAT CGAACTGGAA
AGGGCCCAGC GCGATGGCTT GCCGCTGGCG GTGATCATGC TCGACATCGA TCACTTCAAG
CGCATCAACG ACCGCTTCGG CCATGCCGTC GGCGACCGGG TGCTACGTAG CCTGTGCCAG
CGCATCGCTC AGCGTTTGCG GCGTACCGAT GTGTTCTGCC GCTTGGGCGG GGAAGAGTTC
ATGGTGCTTT GCCCGGGCAG CGATGCCGAT CAGGCCCGGC TGCTGGCGCT GGAGTTATGG
CAAGGGGTGC GCAATGTGCC GGTGGAAGGC GTGGGCCAGG TGACTGCAAG CTTCGGTGTG
GCGGGCTGGC GGTCGGGCGA AGGCGCCGAT GCCTTGCTGT TGCGCGCCGA TGCCGGCGTG
TATGCGGCCA AACAGGCCGG GCGGGACCGG GTGGAGGGGG AGTCGGCCTA A
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| Protein sequence | MSKCGVRARL LGLCTERASA WAMALIALVA GGLLTAALAF AAHTFYKQQL RQRFELLASE
RASRIAERFD EQQQRLDGLR RFFSFSNDIS PREFDGYARP LLQRTLAYAW APRVEAAQRA
EFERLASAHT GPGYVIRDKD AQGQWRPASQ RDHYFPVLYT QSGELPGLPY GLDLAGRSEP
QAALARALGP GSMAVSEPLA LFDTHSAERG LLMVAPVFSD ADPRGAAAGY VVALLSMREL
VSDGRPVATD DNLVVRITDP SGLQGPVVMF DSQNQVAPLA LASNQLLRLA DHYFQLSIQP
SQAFVQANRS SAVLAVGLLG GLLSLLLSVL LYSLLSQRQR ALALVAQRTA ELQVSEQSLR
GTHNQLRSVL DAATQVAIIA TNLKGVVSTF NAGAERMLGY AASEAIGRLR LEDLVLPEEL
NLRAHALSLR FGRAIAGGQA MFAETVQEHG AEPGEWTLLR ADGSQLVANM LVTAMLDEQG
LWVGYLAICI DVTERRRVHE ALAARDRLLE KLSAEVPGGI YQYRLDANGH SCFPYASMGL
YDIYEVDLMQ LREDASGVFE RIHPDDLERV RRSVCYSAEH LSPWREEYRV CLPRAGLRWV
RGEATPEVGE QGCTLWHGYL TDISDLKGVE EELRALSVTD SLTGIHNRRY FQERLKIELE
RAQRDGLPLA VIMLDIDHFK RINDRFGHAV GDRVLRSLCQ RIAQRLRRTD VFCRLGGEEF
MVLCPGSDAD QARLLALELW QGVRNVPVEG VGQVTASFGV AGWRSGEGAD ALLLRADAGV
YAAKQAGRDR VEGESA
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