| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3641 |
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| Symbol | |
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| ID | 5191909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4067136 |
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| End bp | 4068590 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588097 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_001268949 |
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| Protein GI | 148548847 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.038573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAA CGCTTCGTCC CCTCGTTCTT GCCGGCCTGC TGTTGCCACT TGCCTTGCCC
AGCCACGCCG CCGTCAATAC CACCCTGCCT GCCAAAGTGC AGCAGGCGCT CAAGGCCAAC
AAGCTGCAGG ACACAGCGCT GTCGCTGGTG ATGCTGCCGC TGGATGGCCC CGGCACCCCG
ACCGTGTTCA ATGCCGATGT GTCGGTGAAC CCGGCCTCGA CCATGAAATT GGTCACGACC
TACGCCGCCC TCGAACTGCT TGGCCCGACC TTTCAGTGGA AAACCGAGTT CTACACCGAC
GGCACCCTGA GCAACGGTGT GCTTAACGGT AACCTGTACC TTAAAGGTGG CGGTGACCCC
AAACTGAACA TGGAAAAGCT GTGGCTGCTG ATGCGTGACC TGCGCGCCAA TGGCGTGCGC
ACCGTCACCG GTGACCTGGT GCTGGACCGC AGCCATTTCG TGCAACCCAA CCTGCCGCAG
TTCAACGACG ACGGCGGTGA TGATAACAAG CCGTTCCTGG TCAAGCCCGA CTCGCTGCTG
GTCAACCTCA AGGCCCTGCG CTTCGTGGCG CGCAATGATG GTGGCAAAGT CACCGTCGCA
GTCGAGCCGC CGATTGCCAG TATCCGTATC GACAACCAGG TCAAGCCGGT AGCCTCAAAG
AAATGCACCG GTGATGTGCG CTACAACCCG GTGCCCCAGG CCGACGGCAT CAGTGTCACG
GTCAGCGGCC AACTGGGTGA CGGCTGCAAC TCGCAAACCT ACTTGTCGCT GCTCGACCAT
TCCACCTACG CCGCCGGTGC CGTGCGCGCA ATCTGGAACG AACTGGGTGG CAACATCCAG
GGTGGCGACC GCATCGAGAA TGTGCCCAAG AGTGCTCGCC TGCTGGCCCG CGCCTTCTCG
CCAGACCTGG TGGAAGTGAT CCGCGACATC AACAAGTACA GCAACAACAC CATGGCCCAG
CAGCTGTTCC TGAGCCTTGG CGCGCAGTTC CGCACCGATG CCGATGGTGA CGACGCCCGT
GCTGCTCAGC GCGTGGTACG CCAATGGCTG GCGAAAAAAG GTATTACTGC GCCGCATCTG
GTGATGGAAA ACGGCTCTGG CCTGTCGCGT GCCGAACGGG TCAGTACCCG AGAAATGGCC
GAGATGCTGA AAGCCGCCTG GAAGAGCCCT TACGCTGCCG AATTCATGAG CTCGATGCCG
CTGGTGGGCA TGGACGGCAC GATGCGCAAG CGTCTCAAGC GCACCGCGAT GGCCGGCGAA
GGGCACATCA AGACCGGCAC ACTGAACACT GTGCGGGCGA TTGCCGGCTT CAGCCGCGAC
AGCAACGGCC ATACCTGGGC GGTAGCGGCG ATTCTCAACG ACCCGAAACC GTGGGGTGCC
TCGCAGGTGC TGGATCAGGT GTTGCTTGAC CTGTATCGCC AGCCGAAGCT GGCTGGCAGT
ACAGCAGCTA ATTGA
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| Protein sequence | MIKTLRPLVL AGLLLPLALP SHAAVNTTLP AKVQQALKAN KLQDTALSLV MLPLDGPGTP
TVFNADVSVN PASTMKLVTT YAALELLGPT FQWKTEFYTD GTLSNGVLNG NLYLKGGGDP
KLNMEKLWLL MRDLRANGVR TVTGDLVLDR SHFVQPNLPQ FNDDGGDDNK PFLVKPDSLL
VNLKALRFVA RNDGGKVTVA VEPPIASIRI DNQVKPVASK KCTGDVRYNP VPQADGISVT
VSGQLGDGCN SQTYLSLLDH STYAAGAVRA IWNELGGNIQ GGDRIENVPK SARLLARAFS
PDLVEVIRDI NKYSNNTMAQ QLFLSLGAQF RTDADGDDAR AAQRVVRQWL AKKGITAPHL
VMENGSGLSR AERVSTREMA EMLKAAWKSP YAAEFMSSMP LVGMDGTMRK RLKRTAMAGE
GHIKTGTLNT VRAIAGFSRD SNGHTWAVAA ILNDPKPWGA SQVLDQVLLD LYRQPKLAGS
TAAN
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