Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3622 |
Symbol | |
ID | 5190841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4045241 |
End bp | 4047004 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640588078 |
Product | lipid ABC transporter ATPase/inner membrane protein |
Protein accession | YP_001268930 |
Protein GI | 148548828 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.368262 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGAAT CGGTTTCTCC GCGCCAACGC CGCGCCTTGC GCCTGGCTTG GCAGTTCGTT CGCCCTTATC GCCGCCAGGT GCTGCTGGCA TTGCTGGCGC TGGTGGTCAC CGCTGCCATT ACCCTGTCGA TGGGCCAAGG CATCCGCCTG CTGGTGGATC AAGGCTTCAT GACCCGCTCC GCGCATCAGC TCAATCAGAC CATCGGGCTG TTCCTGCTGC TGGTGCTGGC GCTGGCGGTG GGTACCTTCA GCCGTTTCTA TCTGGTGTCG TGGATTGGCG AGCGTTGTGT GGCCGATATC CGTCGTGCCG TCTTCGATCA CCTGATCGGC CTGCACCCAG GTTTTTTCGA AGACAATCGC AGCTCCGAGA TCCAGTCTCG GCTGACTGCG GACACCACCT TGCTGCAATC GGTGATCGGT TCATCGCTGT CGATGTTCCT GCGCAACGCG CTGATGGTCA TTGGTGGTGT GGTCTTGCTG TTCATCACCA ACCCCAAGCT CACCAGCATC GTGGTGGTAA CGCTGCCACT GGTGTTGGCA CCGATCCTGT TGTTCGGCCG TCGGGTGCGC AGCCTGTCGC GGCAGAGCCA GGACAGGGTC GCCGATGTGG GCAGCTACGT GGCTGAAACG CTCGGGCAGA TCAAGACCGT GCAGGCCTAC AACCACCAGG CGCACGACCG CGCATTGTTC GCCGATATGG TCGAAGCCGC GTTTACTGTT GCCCGCAAGC GGATTACACA GCGTGCCTGG CTGATTACCC TGGTGATCGT GCTGGTGTTG GGGGCGGTGG GGGTGATGCT GTGGGTCGGC GGCATGGATG TGATCGCCGG GCGTATATCC GCAGGCGAGC TGGCTGCATT CGTGTTCTAC AGCCTGATCG TCGGCAGCGC CTTCGGCACC CTCAGTGAGG TGATCGGCGA ACTGCAACGG GCCGCGGGTG CCGCCGAGCG CATTGCCGAA CTGTTGGCCG CGCGCAGTGC CATCCTGCCG CCCGCCGTGG CGCAGGTGCT GCCACAGCCG CGGGCCAGTG GGCGTATCGA GCTGCAGCAG GTCGTGTTCG CTTACCCTTC ACGGCCCACG GTGGCAGCTG TCGACGGCCT GAGCCTGACC ATCGAACCCG GGCAGACCGT CGCCCTGGTA GGCCCTTCCG GGGCAGGCAA GTCGACCCTG TTCGATCTGT TGCTGCGCTT TTACGACCCC CAACAAGGGC GCATCCTGCT TGATGGCCTG CCGGTTACCG CATGTGATCC CGACCAGCTA CGCCGGCAGT TCGCTTTGGT GGCACAAAAC CCCTCGCTGT TCCGTGGCAC GGTGGAGGCC AACATTCGTT ATGGCCGGCC CGAGGCGACC TTGGCCGAAG TCGAAGCAGC AGCCCGCGGC GCCCATGCCG ACGAATTCAT CCGGCAACTG CCCCGAGGCT ACCAGACACA ACTGGGGGAG GGCGGCATAG GCCTTTCCGG CGGGCAACGT CAGCGCCTGG CGATTGCCCG GGCCTTGCTG GTCGATGCGC CGATCCTGTT GCTGGACGAA GCCACCAGTG CCCTTGATGC ACAAAGCGAA TACTTGATCC AGCAAGCGCT GCCCAGCCTG ATGGCCGGCC GTACCACGCT GGTGATCGCC CATCGCCTGG CCACGGTGCA GCATGCCGAG CGCATCGCGG TCATCGACCA GGGCCGGCTG GTGGCGGTGG GCACCCACCG TCAGTTGATC GAGGACAGCC CGCTGTATGC GCGGCTGGCA GCGCTGCAGT TCACCACGGG CTAG
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Protein sequence | MPESVSPRQR RALRLAWQFV RPYRRQVLLA LLALVVTAAI TLSMGQGIRL LVDQGFMTRS AHQLNQTIGL FLLLVLALAV GTFSRFYLVS WIGERCVADI RRAVFDHLIG LHPGFFEDNR SSEIQSRLTA DTTLLQSVIG SSLSMFLRNA LMVIGGVVLL FITNPKLTSI VVVTLPLVLA PILLFGRRVR SLSRQSQDRV ADVGSYVAET LGQIKTVQAY NHQAHDRALF ADMVEAAFTV ARKRITQRAW LITLVIVLVL GAVGVMLWVG GMDVIAGRIS AGELAAFVFY SLIVGSAFGT LSEVIGELQR AAGAAERIAE LLAARSAILP PAVAQVLPQP RASGRIELQQ VVFAYPSRPT VAAVDGLSLT IEPGQTVALV GPSGAGKSTL FDLLLRFYDP QQGRILLDGL PVTACDPDQL RRQFALVAQN PSLFRGTVEA NIRYGRPEAT LAEVEAAARG AHADEFIRQL PRGYQTQLGE GGIGLSGGQR QRLAIARALL VDAPILLLDE ATSALDAQSE YLIQQALPSL MAGRTTLVIA HRLATVQHAE RIAVIDQGRL VAVGTHRQLI EDSPLYARLA ALQFTTG
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