Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3610 |
Symbol | |
ID | 5195403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4032038 |
End bp | 4033987 |
Gene Length | 1950 bp |
Protein Length | 649 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640588065 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_001268918 |
Protein GI | 148548816 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.184203 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTCAAC TGCCCGGACG TATCATGCGC AGCCGCCTGT TACACATCGC ATCCTGCCTG CTGCTTACCG CTGCCACCAG CGCGGCGCAG GCCACCGACC TGACCCTGCA ACGCCAGTAC TATGACGAAG CCAAGCGAGC GCTGGCCAAA GGCGACAAAG GCCCCTACCT GCGCTATGCC CAGGCCTTGA GCGACTACCC GTTGACGCCC TACCTGGCCT ACGACGAACT CACCGCCCGC CTGAAAAGCG CCAGCAACCA GGAAATCGAA GGTTTCCTGG CCAAGCATGG CGACCTGCCC CAGGCCAACT GGATGAAACT GCGCTGGTTG CGCTGGCTGG CTGAACGCGG CGAGTGGGAT ACCTTCGTCA AGTACTACGA CCCCAAGCTC AACTTCACCG AGCTGGACTG CCTCAACGGC CAATACCAGC TCAGCCACGG CTTGCGCGCC GAAGGTTACG CCACCGCAGA CAAGCTGTGG AACGTCGGCA AATCGCAACC TGCCGCCTGC GACACGCTGT TCGGCATGTG GGCAGCCGAA GGCCAGCTGA CCGAGGCCAA GCGCTGGGAA CGCACCAAGC TGGCCGCCCA GGCGCGCAAC TACGGCCTGG CCAACACCCT GGTCAAGTCC CTGACCACCC TCGGCCCGCA GGGGCGCCTG CTGATCGACG TCGCGCAGAA GCCCGAGCTG CTCAACCAGC CGTCGCGCTT TACCCCGGTC AACGAGGCCA TGTCCGACGT GGTCAGCCTC GGCCTTCGTC GCCTGGCCCG ACAGGACCCG GAGCGGGCCA TGGCACTGCT CGACGATTAC GCCCAGCGCA TGCACTTCTC GCGTGACGAA AAGGTGGCCA TCGCCCGCGA AATCGGCCTG ACCCTCGCAC GCCGCTACGA CCCACGCGCG CTCGACCTGA TGACCCGCTA TGACCCCGAG CTGCGTGACA ACACAGTCAG CGAATGGCGC CTTCGCCTGC TGCTGCGCCT GGGCCGCTGG GAGGACGCCT ACGAGCTGAC CAAGCGCCTT CCTCAGGACC TGGCCAGCAC CAGCCGCTGG AAGTACTGGC AGGCTCGCAG CCTGGAGCTG GCACAGCCCA ACAACCCGCA GATCCCGCTG CTGTACAAGA CCGCAGCGCG TGAGCGTGAC TTCTATGGCT TCCTCGCCGC CGACCGGGCA CAGACACCGT ACCAGCTGAA CAACAAGCCG CTGCTGCTGA GCCCCCAGCT GGTCAAGAAG GTCCGCAACA CGCCCGGCAT CCAGCGCGCA CTGGAATTCC ACGCCCGCGG TCAGATCGTC GACGGCCGCC GTGAGTGGTA CCACGTCAGC CGCCACTTCA CCCGTGACGA AATGGTTGCG CAGGCACGCC TGGGCTATGA GCTGCGCTGG TACTTCCCGG CCATCCGCAC CATCAGCCAG GCCCGGTACT GGGACGACCT GGACATCCGC TTTCCCATGG CCCACCGCGA CACGCTGGTG CGTGAAGCCA AGGTTCGCGG CCTGCATTCG AGCTGGGTAT TCGCCATCAC TCGCCAGGAA AGCGCCTTCA TGGAGGACGC ACGCTCACCC GTGGGCGCCA GCGGCCTGAT GCAACTGATG CCGGCCACGG CCAAGGAAAC CGCACGCAAG TTCAGCATCC CGCTGGCCTC ACCGGCGCAA GTGCTGAACC CGGACAAGAA CATCCAGCTG GGTGCGGCCT ACCTGAGCCA GGTACACAGC CAGTTCAACG GCAACCGGGT GCTGGCTTCG GCAGCCTACA ACGCCGGGCC CGGGCGCGTG CGACAGTGGC TCAAAGGGGC CAAGCACCTG AGCTTCGATG TGTGGGTGGA GTCGATCCCG TTCGACGAAA CACGCCAGTA TGTACAGAAC GTGCTGTCGT ATTCGGTGAT CTACGGGCAG AAGCTGAATT CACCGCAGCC ACTGGTGGAT TGGCACGAAC GGTATTTCGA TGACATGTGA
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Protein sequence | MVQLPGRIMR SRLLHIASCL LLTAATSAAQ ATDLTLQRQY YDEAKRALAK GDKGPYLRYA QALSDYPLTP YLAYDELTAR LKSASNQEIE GFLAKHGDLP QANWMKLRWL RWLAERGEWD TFVKYYDPKL NFTELDCLNG QYQLSHGLRA EGYATADKLW NVGKSQPAAC DTLFGMWAAE GQLTEAKRWE RTKLAAQARN YGLANTLVKS LTTLGPQGRL LIDVAQKPEL LNQPSRFTPV NEAMSDVVSL GLRRLARQDP ERAMALLDDY AQRMHFSRDE KVAIAREIGL TLARRYDPRA LDLMTRYDPE LRDNTVSEWR LRLLLRLGRW EDAYELTKRL PQDLASTSRW KYWQARSLEL AQPNNPQIPL LYKTAARERD FYGFLAADRA QTPYQLNNKP LLLSPQLVKK VRNTPGIQRA LEFHARGQIV DGRREWYHVS RHFTRDEMVA QARLGYELRW YFPAIRTISQ ARYWDDLDIR FPMAHRDTLV REAKVRGLHS SWVFAITRQE SAFMEDARSP VGASGLMQLM PATAKETARK FSIPLASPAQ VLNPDKNIQL GAAYLSQVHS QFNGNRVLAS AAYNAGPGRV RQWLKGAKHL SFDVWVESIP FDETRQYVQN VLSYSVIYGQ KLNSPQPLVD WHERYFDDM
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