Gene Pput_3610 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3610 
Symbol 
ID5195403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4032038 
End bp4033987 
Gene Length1950 bp 
Protein Length649 aa 
Translation table11 
GC content65% 
IMG OID640588065 
Productlytic transglycosylase, catalytic 
Protein accessionYP_001268918 
Protein GI148548816 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.184203 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCAAC TGCCCGGACG TATCATGCGC AGCCGCCTGT TACACATCGC ATCCTGCCTG 
CTGCTTACCG CTGCCACCAG CGCGGCGCAG GCCACCGACC TGACCCTGCA ACGCCAGTAC
TATGACGAAG CCAAGCGAGC GCTGGCCAAA GGCGACAAAG GCCCCTACCT GCGCTATGCC
CAGGCCTTGA GCGACTACCC GTTGACGCCC TACCTGGCCT ACGACGAACT CACCGCCCGC
CTGAAAAGCG CCAGCAACCA GGAAATCGAA GGTTTCCTGG CCAAGCATGG CGACCTGCCC
CAGGCCAACT GGATGAAACT GCGCTGGTTG CGCTGGCTGG CTGAACGCGG CGAGTGGGAT
ACCTTCGTCA AGTACTACGA CCCCAAGCTC AACTTCACCG AGCTGGACTG CCTCAACGGC
CAATACCAGC TCAGCCACGG CTTGCGCGCC GAAGGTTACG CCACCGCAGA CAAGCTGTGG
AACGTCGGCA AATCGCAACC TGCCGCCTGC GACACGCTGT TCGGCATGTG GGCAGCCGAA
GGCCAGCTGA CCGAGGCCAA GCGCTGGGAA CGCACCAAGC TGGCCGCCCA GGCGCGCAAC
TACGGCCTGG CCAACACCCT GGTCAAGTCC CTGACCACCC TCGGCCCGCA GGGGCGCCTG
CTGATCGACG TCGCGCAGAA GCCCGAGCTG CTCAACCAGC CGTCGCGCTT TACCCCGGTC
AACGAGGCCA TGTCCGACGT GGTCAGCCTC GGCCTTCGTC GCCTGGCCCG ACAGGACCCG
GAGCGGGCCA TGGCACTGCT CGACGATTAC GCCCAGCGCA TGCACTTCTC GCGTGACGAA
AAGGTGGCCA TCGCCCGCGA AATCGGCCTG ACCCTCGCAC GCCGCTACGA CCCACGCGCG
CTCGACCTGA TGACCCGCTA TGACCCCGAG CTGCGTGACA ACACAGTCAG CGAATGGCGC
CTTCGCCTGC TGCTGCGCCT GGGCCGCTGG GAGGACGCCT ACGAGCTGAC CAAGCGCCTT
CCTCAGGACC TGGCCAGCAC CAGCCGCTGG AAGTACTGGC AGGCTCGCAG CCTGGAGCTG
GCACAGCCCA ACAACCCGCA GATCCCGCTG CTGTACAAGA CCGCAGCGCG TGAGCGTGAC
TTCTATGGCT TCCTCGCCGC CGACCGGGCA CAGACACCGT ACCAGCTGAA CAACAAGCCG
CTGCTGCTGA GCCCCCAGCT GGTCAAGAAG GTCCGCAACA CGCCCGGCAT CCAGCGCGCA
CTGGAATTCC ACGCCCGCGG TCAGATCGTC GACGGCCGCC GTGAGTGGTA CCACGTCAGC
CGCCACTTCA CCCGTGACGA AATGGTTGCG CAGGCACGCC TGGGCTATGA GCTGCGCTGG
TACTTCCCGG CCATCCGCAC CATCAGCCAG GCCCGGTACT GGGACGACCT GGACATCCGC
TTTCCCATGG CCCACCGCGA CACGCTGGTG CGTGAAGCCA AGGTTCGCGG CCTGCATTCG
AGCTGGGTAT TCGCCATCAC TCGCCAGGAA AGCGCCTTCA TGGAGGACGC ACGCTCACCC
GTGGGCGCCA GCGGCCTGAT GCAACTGATG CCGGCCACGG CCAAGGAAAC CGCACGCAAG
TTCAGCATCC CGCTGGCCTC ACCGGCGCAA GTGCTGAACC CGGACAAGAA CATCCAGCTG
GGTGCGGCCT ACCTGAGCCA GGTACACAGC CAGTTCAACG GCAACCGGGT GCTGGCTTCG
GCAGCCTACA ACGCCGGGCC CGGGCGCGTG CGACAGTGGC TCAAAGGGGC CAAGCACCTG
AGCTTCGATG TGTGGGTGGA GTCGATCCCG TTCGACGAAA CACGCCAGTA TGTACAGAAC
GTGCTGTCGT ATTCGGTGAT CTACGGGCAG AAGCTGAATT CACCGCAGCC ACTGGTGGAT
TGGCACGAAC GGTATTTCGA TGACATGTGA
 
Protein sequence
MVQLPGRIMR SRLLHIASCL LLTAATSAAQ ATDLTLQRQY YDEAKRALAK GDKGPYLRYA 
QALSDYPLTP YLAYDELTAR LKSASNQEIE GFLAKHGDLP QANWMKLRWL RWLAERGEWD
TFVKYYDPKL NFTELDCLNG QYQLSHGLRA EGYATADKLW NVGKSQPAAC DTLFGMWAAE
GQLTEAKRWE RTKLAAQARN YGLANTLVKS LTTLGPQGRL LIDVAQKPEL LNQPSRFTPV
NEAMSDVVSL GLRRLARQDP ERAMALLDDY AQRMHFSRDE KVAIAREIGL TLARRYDPRA
LDLMTRYDPE LRDNTVSEWR LRLLLRLGRW EDAYELTKRL PQDLASTSRW KYWQARSLEL
AQPNNPQIPL LYKTAARERD FYGFLAADRA QTPYQLNNKP LLLSPQLVKK VRNTPGIQRA
LEFHARGQIV DGRREWYHVS RHFTRDEMVA QARLGYELRW YFPAIRTISQ ARYWDDLDIR
FPMAHRDTLV REAKVRGLHS SWVFAITRQE SAFMEDARSP VGASGLMQLM PATAKETARK
FSIPLASPAQ VLNPDKNIQL GAAYLSQVHS QFNGNRVLAS AAYNAGPGRV RQWLKGAKHL
SFDVWVESIP FDETRQYVQN VLSYSVIYGQ KLNSPQPLVD WHERYFDDM