Gene Pput_3605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3605 
SymbolfadA 
ID5190371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4024851 
End bp4026026 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content62% 
IMG OID640588060 
Product3-ketoacyl-CoA thiolase 
Protein accessionYP_001268913 
Protein GI148548811 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.210112 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.327028 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTGA ATCCAAGAGA CGTGGTGATT GTCGACTTCG GTCGCACGCC AATGGGCCGC 
TCCAAGGGTG GCATGCACCG CAACACCCGC GCCGAAGACA TGTCGGCGCA CCTGATCAGC
AAGCTGCTGG AACGCAACGG CAAGGTTGAC CCGAAAGAAG TCGAGGACGT GATCTGGGGC
TGCGTCAACC AGACCCTGGA GCAGGGCTGG AACATCGCCC GCATGGCCTC GCTGATGACC
CAGATCCCGC ACACTTCCGC GGCGCAGACC GTCAGCCGCC TGTGCGGCTC GTCCATGAGC
GCGCTGCACA CGGCCGCCCA GGCGATCATG ACCGGTAACG GTGATGTGTT CGTGGTCGGT
GGCGTGGAGC ACATGGGCCA CGTCAGCATG ATGCATGGCG TAGACCCCAA CCCGCACCTG
TCCTTGCATG CCGCCAAGGC TTCCGGGATG ATGGGCCTGA CTGCAGAAAT GCTCGGCAAG
ATGCACGGCA TCACCCGTGA GCAGCAGGAC CTGTTCGGCT TGCGTTCGCA CCAGCTGGCC
CACAAGGCCA CGGTCGAAGG CAAGTTCAAG GACGAGATCA TCCCGATGCA GGGCTACGAC
GAGAACGGCT TCCTGAAGGT GTTCGATTTC GACGAAACCA TTCGCCCGGA AACCACCCTC
GAAGGCCTGG CATCGCTGAA GCCTGCGTTC AACCCGAAAG GCGGTACGGT CACGGCCGGT
ACCTCGTCGC AGATCACCGA CGGCGCCTCG TGCATGATCG TCATGTCCGG TCAGCGTGCC
ATGGACCTCG GTATCCAGCC ATTGGCGGTG ATCCGTTCGA TGGCAGTGGC CGGTGTCGAC
CCGGCAATCA TGGGCTACGG CCCGGTGCCA TCGACCCAGA AAGCCCTCAA GCGTGCCGGC
CTGACCATGG CCGATATCGA CTTCATCGAG CTCAACGAAG CCTTCGCTGC ACAGGCCCTG
CCCGTGCTGA AAGACTTGAA AGTGCTCGAC AAGATGGATG AGAAGGTTAA CCTGCACGGC
GGCGCCATTG CTTTGGGCCA TCCGTTCGGT TGCTCCGGGG CGCGGATTTC CGGCACCCTG
CTCAACGTCA TGAAGCAAAA TGGCGGTACG CTGGGTGTTG CGACCATGTG CGTCGGCCTG
GGCCAAGGTA TCACCACTGT CTTCGAACGC GTCTGA
 
Protein sequence
MSLNPRDVVI VDFGRTPMGR SKGGMHRNTR AEDMSAHLIS KLLERNGKVD PKEVEDVIWG 
CVNQTLEQGW NIARMASLMT QIPHTSAAQT VSRLCGSSMS ALHTAAQAIM TGNGDVFVVG
GVEHMGHVSM MHGVDPNPHL SLHAAKASGM MGLTAEMLGK MHGITREQQD LFGLRSHQLA
HKATVEGKFK DEIIPMQGYD ENGFLKVFDF DETIRPETTL EGLASLKPAF NPKGGTVTAG
TSSQITDGAS CMIVMSGQRA MDLGIQPLAV IRSMAVAGVD PAIMGYGPVP STQKALKRAG
LTMADIDFIE LNEAFAAQAL PVLKDLKVLD KMDEKVNLHG GAIALGHPFG CSGARISGTL
LNVMKQNGGT LGVATMCVGL GQGITTVFER V