Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3605 |
Symbol | fadA |
ID | 5190371 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4024851 |
End bp | 4026026 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640588060 |
Product | 3-ketoacyl-CoA thiolase |
Protein accession | YP_001268913 |
Protein GI | 148548811 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02445] fatty oxidation complex, beta subunit FadA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.210112 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.327028 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCTGA ATCCAAGAGA CGTGGTGATT GTCGACTTCG GTCGCACGCC AATGGGCCGC TCCAAGGGTG GCATGCACCG CAACACCCGC GCCGAAGACA TGTCGGCGCA CCTGATCAGC AAGCTGCTGG AACGCAACGG CAAGGTTGAC CCGAAAGAAG TCGAGGACGT GATCTGGGGC TGCGTCAACC AGACCCTGGA GCAGGGCTGG AACATCGCCC GCATGGCCTC GCTGATGACC CAGATCCCGC ACACTTCCGC GGCGCAGACC GTCAGCCGCC TGTGCGGCTC GTCCATGAGC GCGCTGCACA CGGCCGCCCA GGCGATCATG ACCGGTAACG GTGATGTGTT CGTGGTCGGT GGCGTGGAGC ACATGGGCCA CGTCAGCATG ATGCATGGCG TAGACCCCAA CCCGCACCTG TCCTTGCATG CCGCCAAGGC TTCCGGGATG ATGGGCCTGA CTGCAGAAAT GCTCGGCAAG ATGCACGGCA TCACCCGTGA GCAGCAGGAC CTGTTCGGCT TGCGTTCGCA CCAGCTGGCC CACAAGGCCA CGGTCGAAGG CAAGTTCAAG GACGAGATCA TCCCGATGCA GGGCTACGAC GAGAACGGCT TCCTGAAGGT GTTCGATTTC GACGAAACCA TTCGCCCGGA AACCACCCTC GAAGGCCTGG CATCGCTGAA GCCTGCGTTC AACCCGAAAG GCGGTACGGT CACGGCCGGT ACCTCGTCGC AGATCACCGA CGGCGCCTCG TGCATGATCG TCATGTCCGG TCAGCGTGCC ATGGACCTCG GTATCCAGCC ATTGGCGGTG ATCCGTTCGA TGGCAGTGGC CGGTGTCGAC CCGGCAATCA TGGGCTACGG CCCGGTGCCA TCGACCCAGA AAGCCCTCAA GCGTGCCGGC CTGACCATGG CCGATATCGA CTTCATCGAG CTCAACGAAG CCTTCGCTGC ACAGGCCCTG CCCGTGCTGA AAGACTTGAA AGTGCTCGAC AAGATGGATG AGAAGGTTAA CCTGCACGGC GGCGCCATTG CTTTGGGCCA TCCGTTCGGT TGCTCCGGGG CGCGGATTTC CGGCACCCTG CTCAACGTCA TGAAGCAAAA TGGCGGTACG CTGGGTGTTG CGACCATGTG CGTCGGCCTG GGCCAAGGTA TCACCACTGT CTTCGAACGC GTCTGA
|
Protein sequence | MSLNPRDVVI VDFGRTPMGR SKGGMHRNTR AEDMSAHLIS KLLERNGKVD PKEVEDVIWG CVNQTLEQGW NIARMASLMT QIPHTSAAQT VSRLCGSSMS ALHTAAQAIM TGNGDVFVVG GVEHMGHVSM MHGVDPNPHL SLHAAKASGM MGLTAEMLGK MHGITREQQD LFGLRSHQLA HKATVEGKFK DEIIPMQGYD ENGFLKVFDF DETIRPETTL EGLASLKPAF NPKGGTVTAG TSSQITDGAS CMIVMSGQRA MDLGIQPLAV IRSMAVAGVD PAIMGYGPVP STQKALKRAG LTMADIDFIE LNEAFAAQAL PVLKDLKVLD KMDEKVNLHG GAIALGHPFG CSGARISGTL LNVMKQNGGT LGVATMCVGL GQGITTVFER V
|
| |