| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3603 |
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| Symbol | |
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| ID | 5193061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4021814 |
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| End bp | 4024423 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588058 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001268911 |
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| Protein GI | 148548809 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0171104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.313127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAAAT CGCTGGTCAT TGTGGAATCC CCGGCCAAGG CCAAGACCAT CAACAAGTAC
CTGGGCAACC AGTACGTGGT GAAGTCGAGT ATCGGCCATA TCCGAGACCT CCCCACCAGC
GGTTCGGCCA GCGCGAGCAA AGAGCCGGCC GCCAAGCGTG GCAAGGCTGC GGGTGAGGCG
CCGGCGCTTT CGCCAAAAGA GAAGGCCCGC CGCCAGCTGG TGGCACGCAT GGGCGTCGAC
CCCGACCATG GCTGGAAGGC CAAGTACGAG ATCCTGCCTG GCAAGGAAAA GGTGATCGAA
GAGCTGCGCC GCCTGGCCAA GGATGCCGAC ACCATCTATC TCGCAACCGA CTTGGACCGC
GAAGGGGAAG CCATTGCCTG GCACCTGCGC GAGGCCATCG GGGGTGACGA CACCCGCTAC
AAGCGCGTGG TGTTCAACGA AATTACCAAG AAGGCCATTC AGGAAGCGTT CTCGCAGCCA
GGCGAGCTGG ACATCGACCG GGTCAACGCC CAGCAGGCGC GGCGTTTCCT CGACCGCGTG
GTCGGTTACA TGGTTTCGCC GCTGCTGTGG GCCAAGATTG CCCGTGGCCT GTCCGCTGGC
CGTGTGCAGT CGGTAGCGGT GAAGCTGGTG GTTGAGCGAG AGCGTGAGAT CCGCGCGTTC
ATCCCGGAAG AGTATTGGGA GATCCACGCC GACCTCGGCA CCGCCAAGAA CGCCAAGGTG
CGTTTCGAGG TGGCGCGCGA GAAGGGCGAG GCCTTCAAGC CGCTGAACGA AGCTCAGGCC
ATGGCTGCAC TGGAGAAGCT CAAGGCTTCC AGTTACAGCG TGGTCAAGCG CGAAGACCGC
CCGACCAGCA GCAAGCCATC GGCACCGTTC ATTACGTCCA CCTTGCAGCA AGCGGCCAGT
AACCGCCTGG GCTTCGGTGT GAAGAAAACC ATGATGATGG CCCAGCGCTT GTACGAAGCC
GGTTACATCA CGTACATGCG TACCGACTCG ACCAACCTGT CGGCTGACGC CCTGGATATG
GCACGCAGCT ACATCGAACG GGAGTTCGGC AAGCAGTACC TGCCAGAGGC GCCACTGGTT
TACGGCAGCA AGGAGGGCGC CCAGGAGGCG CACGAAGCGA TTCGGCCTTC TGACGTGAAT
ACCCACCCGA CCAAGCTCAG CGGCATGGAG CGTGACGCCG AGCGCCTGTA TGAGCTGATC
TGGCGCCAGT TCCTGGCGTG CCAGATGCCG CCGGCGCAGT ACCTGTCCAC CAGCGTTACC
GTCGCTGCCG GCGATTTCGA GCTGCGTGCC AAGGGCCGCA TCCTCAAGTT CGACGGCTAC
ACCCGTGTGC TGCCACAGCA GAGCAAGCCG GGCGAAGACG ACGTGCTGCC AGAGATGGTT
CAGGGTGAAG CGCTGAAACT GATCCAGATC GACCCGAGCC AGCACTTTAC CAAGCCGCCT
GCACGCTTTA CCGAAGCCAG CCTGGTCAAG GAAATGGAAA AGCGCGGCAT TGGCCGCCCA
TCGACCTACG CGGCGATCAT TTCCACCATC CAGGACCGTG GCTATGTGAC GCTGCACAAC
CGCCGCTTCT ACTCCGAGAA GATGGGCGAT ATCGTCACCG AGCGCTTGTC GGAGAGCTTC
TCCAACCTGA TGGATTACGG CTTTACCGCC GACATGGAAG AGAACCTCGA CGACGTGGCC
CAGGGCGAGC GTGACTGGAA GAACGTGCTC GACGAGTTCT ACGGCGATTT CAGCAAAAAG
CTGCAGACTG CCGAGTCCAG CGAAGACGGC ATGCGCGCCA ACCAGCCGAC CATGACCAAC
ATTCCATGCA AGGAATGTGG TCGGCCGATG ATGATTCGCA CCGCTTCTAC GGGTGTGTTC
CTGGGCTGCT CTGGCTACAG CCTGCCGCCG AAAGAGCGCT GCAAGGCTAC CGTCAACCTG
GTGCCGGGCG ACGAGATTGC CGCTGACGAC GAGGGCGAGT CGGAGTCGCG CGTACTGCTG
GGCAAGCACC GTTGCCCGAT CTGCGCCACC GCGATGGACG CCTACCTGCT GGACGAGAAA
CACAAACTGC ACATCTGCGG TAACAACCCG GATTGTGTCG GTTACGAGAT CGAGGAAGGC
AACTACCGCA TCAAGGGTTA CGAAGGGCCG AGCCTGGAGT GCGACAAGTG CGGTAGCGAG
ATGCAATTGA AGACCGGCCG TTTCGGCAAG TTCTTCGGCT GCACCAACCC GGCATGCAAG
AACACCCGCA AGCTGCTCAA GAGCGGCGAG GCGGCGCCAC CGAAGATGGA CAAGGTGGAC
ATGCCGGAGC TCAAGTGCGA GAAGGTCGAC GATACCTACG TGCTGCGCGA CGGTGCTTCT
GGGTTGTTCC TGGCTGCCAG CCAGTTCCCC AAGAACCGCG AAACCCGTGC GCCGCTGGTG
CTGGAGATCG TGCCGCACAA GCATGAGATC GACCCGAAGT ACCACTTCCT GTGCGATGCG
CCGCAGAAAG ACCCGGATGG CCGCCCGGCG GTGATTCGTT ACAGCCGCAA GACCAAGGAG
CAGTACGTGC AGTCCGAGGT CGATGGCAAG CCGACCGGCT GGAAGGCGTT TTACGACGGC
AATGCCTGGA AAGTTGAAGA CAAGCGCTGA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGNQYVVKSS IGHIRDLPTS GSASASKEPA AKRGKAAGEA
PALSPKEKAR RQLVARMGVD PDHGWKAKYE ILPGKEKVIE ELRRLAKDAD TIYLATDLDR
EGEAIAWHLR EAIGGDDTRY KRVVFNEITK KAIQEAFSQP GELDIDRVNA QQARRFLDRV
VGYMVSPLLW AKIARGLSAG RVQSVAVKLV VEREREIRAF IPEEYWEIHA DLGTAKNAKV
RFEVAREKGE AFKPLNEAQA MAALEKLKAS SYSVVKREDR PTSSKPSAPF ITSTLQQAAS
NRLGFGVKKT MMMAQRLYEA GYITYMRTDS TNLSADALDM ARSYIEREFG KQYLPEAPLV
YGSKEGAQEA HEAIRPSDVN THPTKLSGME RDAERLYELI WRQFLACQMP PAQYLSTSVT
VAAGDFELRA KGRILKFDGY TRVLPQQSKP GEDDVLPEMV QGEALKLIQI DPSQHFTKPP
ARFTEASLVK EMEKRGIGRP STYAAIISTI QDRGYVTLHN RRFYSEKMGD IVTERLSESF
SNLMDYGFTA DMEENLDDVA QGERDWKNVL DEFYGDFSKK LQTAESSEDG MRANQPTMTN
IPCKECGRPM MIRTASTGVF LGCSGYSLPP KERCKATVNL VPGDEIAADD EGESESRVLL
GKHRCPICAT AMDAYLLDEK HKLHICGNNP DCVGYEIEEG NYRIKGYEGP SLECDKCGSE
MQLKTGRFGK FFGCTNPACK NTRKLLKSGE AAPPKMDKVD MPELKCEKVD DTYVLRDGAS
GLFLAASQFP KNRETRAPLV LEIVPHKHEI DPKYHFLCDA PQKDPDGRPA VIRYSRKTKE
QYVQSEVDGK PTGWKAFYDG NAWKVEDKR
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