| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3596 |
|---|
| Symbol | |
|---|
| ID | 5191198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4013848 |
|---|
| End bp | 4017165 |
|---|
| Gene Length | 3318 bp |
|---|
| Protein Length | 1105 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640588051 |
|---|
| Product | non-specific serine/threonine protein kinase |
|---|
| Protein accession | YP_001268904 |
|---|
| Protein GI | 148548802 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.270477 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGACG ATGCCGCCGA AATGGTGAAC GCCTATCCGA ACTGGATTCA ATCGTTCAGC
AAAGCTGCCC TGCAGCGCGG TGAGCGCTAT GCCGAGGAAG GCAGGGCCGA ACTGGAAGGC
ATTCATGGGC CAACCATAAC GGCCAGTTGC CAGGGGAGCG GCAACAACCA CTACCGGCAA
CACATCAAGT TGCACGTAGC GGGCGGCCGG TGCCATGTGC GCGGTGACTG CGATTGCCCG
GTACGGCAAA ACTGCAAGCA TTGCGCCGCT GTCCTTTTCT GCGTCAGCGA GCGCTTTTCC
AGCAGTAAGG ACACGCAAGC CAACCCGGGC GCCTTGTCCG CCGAACTGCA GCACTGGTTG
AGCGGCCTGG AGCAGGCCCC ACCCAAGACC GACGCGACCG AAGACAAACG CGGGCGCATG
GTGTGCTATC AGCTGCAGCT CACCGACGAT GCGGGCTGCG CCCTGCTTGT GCGCAAGGGC
ACGCGAACGG AGGACGGCAT CCGCTTCAGC CGCGTCCAGT CCCTTTACGA TTTCCTCTAC
GAGCCACCGC GCTTCGTAAC AGACGAAGAC ATCCGCATTC TGCGCCTGCT CTCGGCCCTG
AATCAGGGCG GCGGCCAGGA TCGCGGCTAC CGACTGAAGG GCCATGAAGG TGGCGAGCTG
TTCCAGCGCG CCCTCGAAAC CGGGCGGATG TTCTTCGACA CCGACCTCCC CCTGCTTCAT
GAAGGCCCGG TGCGCCACGC CGAGTTTCGC TGGGTACGCC TGGACAACGG AAATTACCGG
GGGCGGTGGT ACAGCGGCGA AGCGATGCTG CGCTGCGTCA TCCCGCTGCT GCCGCTTTAC
TACCTGGACC TGCCGACCCG TGAAGTGGGC AAGGTCGAGC ACAGCCTGGA TCCCCACGTC
GCCGTACAGC TGACTATTGC ACCCGACGTG CCGGAACACC TGGTCGTACC CCTGAGCCAC
AAGCTCAATG CCCTCAGCCA TAAGGTGCCG ACCCCGACGC AAGTGCAGGA GCAGTTGCTC
GATAACATCC AGCCAAAGCC CCTTCTTGCT CTCGGCAGCC TTGAATACAC CGCCTACATG
CCGAAAACCG GTCGCATGCA ACGGCAAATG CAACACCGCG CCGCATTGGC GTTCGATTAT
GACGGCTTGC AGGCCAGCGG CACCGACGAA AAGCCGCTGA CCCGCCTGGC AGGCAGCACC
AGCCAGCGCA TTCGCCGACA GACTCAAGCC GAGCAGGCGC TGCGCAAGGT GCTGCGCGAT
TTCGGCTTCA AGCCCGCCAC ACGGCAGAGC AAGGCCCTAC CCGACAGCGC CGGCGAAATG
CACCAGTTGC CTGACGACGA AGCCTGGCTG CGTTTTGCCC GCGAAGGCCT GCCGCGCCTG
CGCGAAGCCG GCTGGGACAT CGATATTCAC CGCGACTTCG CCTTCAACCT GCAGGAGGTG
GACGACTGGT ATGCGACCAT CGACGAAGCG CCTGGCCATG AATGGTTCGA CCTGGAACTC
GGCATCGTGG TCGATGGCCA GCGCCACAGC CTGCTGCCGA TCGTGTTGCA CCTGCTGCGC
AGCAGCCCAG AGCTGCTACG CCCTAGCGAA CTGGCCCGGC GCAGCGATGA TGAACACCTG
CTGATCGACC TCAATCGCGG CCGTCTCGAT GCCCCGGCTT TGCGCGTCGC CCTGCCCTAT
GGCCGCATCA AGGCAGTCAT GGGCACCCTG GGCGAGCTCT ACCTGCACGA GGACACGGCA
GGCCCGTCCC TGCGCATGGA GCGCGCCGAC GCCGCGCGCC TGAACGAAAT AGAAGGCCTG
CCCCTGCACT GGGAAGGTGG CGAGCACGTA CGCGATCTGG GCCGGCGCCT GCGCGATGCC
CGGGACCTGC AGGTAGAACC ACCCACAGGG CTGCAGGCCA GCTTGCGCCC TTATCAGCAG
CAAGGCTTGA ACTGGCTGCA GGCCCTGCGC GAGATGGGTA CCGGCGGTAT CCTCGGCGAC
GACATGGGCC TGGGCAAGAC CCTGCAGGCC TTGGCCCATC TGCTGCTGGA GAAACAGTGC
GGGCGCCTGA ATGCACCGGC CCTGGCAGTC ATGCCGACCA GCCTCATACC CAACTGGCTG
GACGAAGCCC AGCGCTTCGC CCCCGACCTG CGCGTCCTGG CACTGCATGG GCCGGGGCGC
AGCAAGCACT TCACCAAACT CCATGAGTAC GATCTGGTCC TGACCACTTA CGCCTTGATG
CCACGCGACC TGGAACAGCT GCGCCCCCAG GCCTGGCACA TGCTGATACT GGACGAGGCG
CAAAACATCA AGAGCAGCAG CAGCAAGGCT GCCCTCGCCG TCTGCGAGCT ACAGGCCGGG
CAGCGCCTGT GCCTGACCGG CACGCCAATG GAAAACAACC TGGGCGAACT GTGGTCGATC
TTCCACTTCC TGATGCCCGG CTGGCTGGGC GACCTGAAGC GCTTCAACCA GGATTACCGC
AACCCGATCG AGCGCCACGG TGACAGCGAG CGCATGGCCC ACCTGGCCAG CCGCATCCGG
CCGTTCCTGC TGCGCCGCAC CAAGGAGCAG GTGGCCACAG AACTGCCGGC CAAGACCGAG
ATGGTGCACT GGGTCGAGCT CAGTGATGCC CAGCGCGATA CGTACGAAGC TGTGCGAGTG
GCCATGGACC AGAAAGTCCG CGACGAAATC GCCCGCAATG GCGCCGCACG CAGCCAGATC
GTGATCCTCG ATGCGCTGCT CAAGCTGCGC CAGGTGTGCT GTGACCTGCG CCTGGTCAAG
GGGGTAGAAA GCAAAGGCAA CCAGGCCGAC AAGGGCAAGC TGGGTGCGCT GCTGGAGATG
CTCGAAGAAC TGCTCAGTGA AGGGCGCCGG GTGTTGTTGT TCTCACAGTT CACCTCGATG
CTGGCGTTGA TCGAGCAGGA GCTCGAGAAG CGCAAAATCC GCTACAGCTT GCTGACCGGT
GACACTCGTG ACCGTCGCAC GCCAGTGCAG CAGTTCCAGC AAGGTGAAAG CGAAGTGTTC
CTGATCAGCC TCAAGGCAGG GGGCGTAGGC TTGAACCTGA CGGCGGCGGA CACCGTGATC
CACTTCGACC CCTGGTGGAA CCCCGCCAGC GAAAACCAAG CTACCGACCG TGCCTACCGC
ATCGGCCAGG ACAAGCCGGT GTTCGTGTTC AAGCTGATTA CCCGGGGTAC GGTGGAAGAG
AAGATCCAGT TGTTGCAGCA GGAAAAGGCT GCATTGGCGG CCAGCCTGCT GGACGGCGGG
CAGGCTGGGC AATGGCGGCT TGGCGATGAA GAAATCGAGG CCCTGTTTGC GCCATTGCCT
GGAAAGCGCG GGCGGTAG
|
|---|
| Protein sequence | MKDDAAEMVN AYPNWIQSFS KAALQRGERY AEEGRAELEG IHGPTITASC QGSGNNHYRQ
HIKLHVAGGR CHVRGDCDCP VRQNCKHCAA VLFCVSERFS SSKDTQANPG ALSAELQHWL
SGLEQAPPKT DATEDKRGRM VCYQLQLTDD AGCALLVRKG TRTEDGIRFS RVQSLYDFLY
EPPRFVTDED IRILRLLSAL NQGGGQDRGY RLKGHEGGEL FQRALETGRM FFDTDLPLLH
EGPVRHAEFR WVRLDNGNYR GRWYSGEAML RCVIPLLPLY YLDLPTREVG KVEHSLDPHV
AVQLTIAPDV PEHLVVPLSH KLNALSHKVP TPTQVQEQLL DNIQPKPLLA LGSLEYTAYM
PKTGRMQRQM QHRAALAFDY DGLQASGTDE KPLTRLAGST SQRIRRQTQA EQALRKVLRD
FGFKPATRQS KALPDSAGEM HQLPDDEAWL RFAREGLPRL REAGWDIDIH RDFAFNLQEV
DDWYATIDEA PGHEWFDLEL GIVVDGQRHS LLPIVLHLLR SSPELLRPSE LARRSDDEHL
LIDLNRGRLD APALRVALPY GRIKAVMGTL GELYLHEDTA GPSLRMERAD AARLNEIEGL
PLHWEGGEHV RDLGRRLRDA RDLQVEPPTG LQASLRPYQQ QGLNWLQALR EMGTGGILGD
DMGLGKTLQA LAHLLLEKQC GRLNAPALAV MPTSLIPNWL DEAQRFAPDL RVLALHGPGR
SKHFTKLHEY DLVLTTYALM PRDLEQLRPQ AWHMLILDEA QNIKSSSSKA ALAVCELQAG
QRLCLTGTPM ENNLGELWSI FHFLMPGWLG DLKRFNQDYR NPIERHGDSE RMAHLASRIR
PFLLRRTKEQ VATELPAKTE MVHWVELSDA QRDTYEAVRV AMDQKVRDEI ARNGAARSQI
VILDALLKLR QVCCDLRLVK GVESKGNQAD KGKLGALLEM LEELLSEGRR VLLFSQFTSM
LALIEQELEK RKIRYSLLTG DTRDRRTPVQ QFQQGESEVF LISLKAGGVG LNLTAADTVI
HFDPWWNPAS ENQATDRAYR IGQDKPVFVF KLITRGTVEE KIQLLQQEKA ALAASLLDGG
QAGQWRLGDE EIEALFAPLP GKRGR
|
|---|
| |