| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3562 |
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| Symbol | |
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| ID | 5192398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3980423 |
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| End bp | 3981127 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588018 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001268871 |
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| Protein GI | 148548769 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.100156 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGTAG AAAAAGTTGC GATCATCACA GCAGGTGGCA GTGGTATGGG CGCGGCAGCG
GCACGGCGCC TGGCCGCTGA CGGGTTCAAG GTCGGCATCC TGTCCTCCTC GGGCAAGGGC
GAAGCGCTGG CTGCCGAGCT TGGCGGTGTG GGTATAACAG GTAGCAACCA GTCGCTTGAG
GACCTGAAAC GCCTGGTCGA TGCCGTGGTG GAAAAGTGGG GGCGCATCGA CGTGCTGGTC
AATAGCGCCG GCCATGGTCC GCGCGCGCCA ATCCTGGAAA TCAGCGACGA AGACTGGCAC
AAGGGCATGG ACACCTATCT GCTCAATGTC ATTCGCCCGA CTCGCCTGGT GACGCCCTAC
ATGCAGCGCC AGAAAGGGGG TGTGATCATC AACATTTCCA CCGCCTGGGC GTTCGAGCCG
AGTGAGCTGT TCCCGACGTC TGCAGTGTTC CGTTCGGGCT TGGCCGCATT CACCAAAATC
TTCGCCGACC AATTCGCCGG GGACAACGTG AGGATCAACA ACGTCCTCCC CGGCTGGATC
GACAGCCTGC CGGCCACCGA ACAGCGCCGC GACAGCGTGC CGCTCAAACG CTATGGCACC
CGCGAGGAAA TCGCCGCCAC CATCGCGTTT CTCGCCAGCG AAGGCGCTGC CTACATCACC
GGGCAGAACA TCAAGGTCGA TGGCGGCGTC ACACGTAGCG TTTGA
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| Protein sequence | MSVEKVAIIT AGGSGMGAAA ARRLAADGFK VGILSSSGKG EALAAELGGV GITGSNQSLE
DLKRLVDAVV EKWGRIDVLV NSAGHGPRAP ILEISDEDWH KGMDTYLLNV IRPTRLVTPY
MQRQKGGVII NISTAWAFEP SELFPTSAVF RSGLAAFTKI FADQFAGDNV RINNVLPGWI
DSLPATEQRR DSVPLKRYGT REEIAATIAF LASEGAAYIT GQNIKVDGGV TRSV
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