| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3545 |
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| Symbol | |
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| ID | 5191912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3963875 |
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| End bp | 3964999 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588001 |
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| Product | anti-FecI sigma factor, FecR |
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| Protein accession | YP_001268854 |
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| Protein GI | 148548752 |
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| COG category | [K] Transcription
[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
[COG3712] Fe2+-dicitrate sensor, membrane component |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.534763 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACTT CACCCATGTC GGGCCTGCTG GCAAGCTTCC AGGAGCACTA CGACGACCTG
CTGCAGTTTC TGACGCGGCG CATGAGCGAC CGTCAGCGCG CGGCCGATGT GGCGCAGGAA
ACCTACCTGA AGCTGGTGAA CATCGACGAG CAGGCGGTGC CGGTGGTGCA CGCGCGCAGT
TTCATCTTCC GTGTGGCCGG CAACCTGGCG ATTGACGCCT TGCGCCGTGA GCAACGCATC
GCCGCCAGCC ACGACGACAG CGACGGAGCC TGTGAGGTGG CCTGCCCGGC GCCGGCACCC
GAGGCGGCGT TGCTGGCCCG CGAGCGCTTG CAGATTCTTG ACCAGGCCCT GTTGCAGTTG
CCCGACAATG CCCGCCAGGC GCTGTTGCTC AACCGTGTCG AGGGCCTGAC CCAGAAGCAG
GTCGCTCAAC GCCTGGGGGT TTCCGAGAGC ATGGTGGCAA AGTATATCGG CCAGGCCTTG
CGCCATTGCC GCGGCCGGCT GAAGCAGGCG GGTGTGGCGG CATCGGTGGT GTTGCTGGTC
GCCGCCGTGG CGGGTTGGCA GCAAGCCCCG ATGCTGCTGG CCGATTACCA CACAGCCGTG
GGCGAACGGC AGGTCATTAC CCTGACAGAT GGCACACGGG TGACGCTGAA CAGCGCCAGT
GCCTTGAGCG TGGTGTTCAG CGAGCATGAG CGGCGTGTGG TACTCGATGC GGGTGAGGCA
CTGTTCGAGA CCGCCGATGA TTCACGTCCG TTCGTGGTCG AAACGGCCGG TGCGCGGGTG
CAGGGCAATG CCGCCACCTT CAGCGTGCAG CGCGATGGCC ACGTCGTGTT GGCACGCGGT
GAAGCCAAGG TGGGTGAACA TGAACTGGCG GTGGCGGCCG ATGCCGGCAC GCAGATGGCC
TGGCAGCGTG GCAAGCTGAT CTTCAACGGC AAACCGCTGG GGCAGGTGCT GACGGAGCTT
GAGCGATACC GGCATGGGCG CATTGTGTTG TCCGACAGCA AGCTGGCTGC GATGGAAGTG
AGCGGGGTGT TTGACCTGGA TGAACCTGAG GCCCTGTTGC GCACGTTGGA GCAGCGGTAT
GGCCTGAAGG TGACTTACCT GCCGTGGTTG GCCGTGGTGC ATTGA
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| Protein sequence | MLTSPMSGLL ASFQEHYDDL LQFLTRRMSD RQRAADVAQE TYLKLVNIDE QAVPVVHARS
FIFRVAGNLA IDALRREQRI AASHDDSDGA CEVACPAPAP EAALLARERL QILDQALLQL
PDNARQALLL NRVEGLTQKQ VAQRLGVSES MVAKYIGQAL RHCRGRLKQA GVAASVVLLV
AAVAGWQQAP MLLADYHTAV GERQVITLTD GTRVTLNSAS ALSVVFSEHE RRVVLDAGEA
LFETADDSRP FVVETAGARV QGNAATFSVQ RDGHVVLARG EAKVGEHELA VAADAGTQMA
WQRGKLIFNG KPLGQVLTEL ERYRHGRIVL SDSKLAAMEV SGVFDLDEPE ALLRTLEQRY
GLKVTYLPWL AVVH
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