| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3526 |
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| Symbol | |
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| ID | 5190731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3940294 |
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| End bp | 3944739 |
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| Gene Length | 4446 bp |
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| Protein Length | 1481 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640587983 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_001268836 |
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| Protein GI | 148548734 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATCA ACACGACGGG CCATGACCCA TTCATCGGTG CCCGATTACC TGAGTGGCTC
AAACGCGCGT CACGGGGCCA GATCAACACC CTGCGCACCA GCCTGAACGC GCACCACGCC
AGCCAGGCAC GCTTGAGTGG CCTGACGCTT GAGTTACTGC CGCTCCAGCA GTTTGCCGAG
AAGCACCTGG CGGCTTTGCT GGATGCACCG TTGCCGGACG GGCAGGTATT TGCCCAGCTC
GAATGGCTGC GGGTAGCGCC GCGCTTCGGC ACACTGCCAG GTACCTTGCA ACAGACATAC
GGGTACAGCC AGACGCGTGA AAACGGGTTA CTGCGGCTGA TGCGCAACTT TGCTGCGAAT
ACCCGCTACT ACGAGGGCAC GGGGCTGGTT TTGCCAGGCA GCGATAAACC ATTGAATGCA
TCGCTGGAAG CATTGATTAC GGCCTGTCGC AATCTGGACG TTGGTCAGCG CTATCAGGAC
GCGTTGCAAA GGATCTTCCC GCCAGCTACC CAGGCGGTGC TGGCTGAAGA CAAACGTTCG
GGGTTGAAGC TGGCGACCGA GCTTGCGGCT TTGCAGGGAA ACATAAGCGT CGATGTGCAG
CTTGCACTGC GTGAGCTGGT GGACCACGGT CAGGAGCGGC GACAACGAGG GCTTGAAGGC
AAACCCATGC TGCTGAGGGC ATTAGGGAAA CCTGTGGTCG ATGGCTTGCT GATCCACCTG
CATGACAAGG CGGGAAATGA TCGGGGCATC GTACTTTACC TGCCTGGTGA TCCCCGGCAG
GCATTGCGGT TCTTCGACAA TGCCGCCTCC ATGAACAGTA CCGTGGCAAT GTTGTTGCCA
GATCCCGGAT ACTGGCAGTA CTTCACACAG CTCATCAGCC TTGAGCACCG TGCAGGTTTT
GTCAGTACCC TCGGCAAGCG CCTGAAAGAC AAGCTGCCGG ACCTGGAGCT TGAGGGTGAA
ACTCCTGAAG GAGGGATCTT CACGCAACTG GCGACTCGGC AAGTGCAACG GGCCAAGGAA
GATGCCCGGT TGCTGCTGGT ACCGACTGCC GACGCTGATA GCCTGGCGGT AAGCGCCAGA
CACGCTGAGT GGAAAGCGGC AGGTCTGGAC CTGGTAAACC TCGCCGGCTT GTTCATCCCG
GCTGTGGGCG GCGTGCTGCT GGGTCAGGTG GTTGCCCAGA CGTGCGCTGA AGTGTTCGAA
GGGACACGGG ATTGGTCGAG AGGGCACCAA CACGAAGCGC TGCAGCATCT GCTGGGGGTT
GCCGAAACCT TGGCGGCTAC CGCTGCGACG GTGGCGGGTG TCAGTTTTGT GCGCAGTGCG
TTTGTTGCGG GCCTGGAGCC GGTAAGCCTT GGGAATGGGC GCGGTCGCCT GTGGCAGTTC
AACGCCAGGA ATTATCGATC ACTGCCGGGC GCTATCGACC TGTTTGAAGA GGGACGCTAT
GGCGAGGTGG GCCGCCGCTG GGTCCGTATC GATGGGCGCA ACTTCGAAGT GCATCAGCCT
ATCGCCGATG GCCCCTATCG CCTGCGCCAT GTAGCGAGTG AGGGCGGCTA CGGGCCGGTC
GTGTTGCACA ATGGTGAGCG TGGCTGGCAA CTGATGCGTG AGCAACCACT CAGCTGGCAG
GCGCCTGCTC GCATGCTGGA TGCATTATGG CCACAGCATT CCCCTGTCGA CGCGCATCAG
GCCGAGCAGA TCATGCGGGT GGCAGGTATC GATGCAGATT TGTTGCGCGG CGTTCTCGTG
GAAAATCGCC CGGCGCCGGT GAGCCTTGGC CAAACCTTGC GCGCCTTCCA GGCGCATGCA
CGCATTCAAA CGTTTTTCGA GCGTGTTCGG CTGAAGGCGT TGGTGCCATC GGACAGTGAA
CTGCTGGCCT GGTGTGAAGC AAGGCCAGAC GTGGGCGCCG GACTGGAGCA GATCCGGGTG
CATGAGGCCG GGTTGCGGCC GCAATTGTTT GCCCACCTGA CAGAGCAGCC ACTTGCAGCA
GACCCGCTGA GCATGTTGGT AAAGCGGGAC TTTCCGGGTT TGCCTTCGGC CTACATAAAT
GAAGTAACCG ACCAAGCGCA TGAGCTTGAG CACCAAATGG CGCGGGTCGA GCGGCGGCTG
CCATTGCCGT GCGCGAACAA CGCCCGTTCG CTCTTGCGTC TGGCTCGCCT GAGCCGGGGG
CTGGCGGGAT TGTATCTGAG CACAGCGTAC AGTGATGTCA CCGGCGAGTT GGCCCTTGCG
TTGCTGGATA GCTTCGAACT CGAGCACCTT GACCTTGACT TGCGTGACAG CGGGCTGGAT
GGGCGGTCTA TCAGGCGCCT CGGTAGCGGC GGGCAAACCG AGGCAAGAAG AATAGTGGTC
CGGCATGAAG GCAGGTTTCT GATCTACAAC GGGTCAGGTG TGCCACACGT GCTTATTGCT
GACGAGCCGG GATGTATCTT CGAGGCGCTT TTTGCCGCAC TGACATCAGA GCAGCGGGCA
GCGATGCAAC GGGTGGGCAG TGCTGCGGCG AGCCAATTGC GTGAGAAACT TCTGGCGCGG
TTACCCGCTT CCCATTGGGA TATCGCGCGC ATGCTCGGCT GGCCAGAGGA GCAGGCCTGG
CTCAATCCAG GGCGTCGCAT GGACGATGGG CGCGTAGGAT ACCCGCTCAG TGGCCGCCCT
GGCGCTGCAC CCAGAGATGA GCGGGCGATC ATTCGTGACC AGCTACGGTC GCTTTATCCT
GGCCTGGACG AGGCCGCGCT CGATGTGGAG CTGGCGCGTG TGCAACAAGG CCCGCAGCCA
GTCTTCGAGC GCCTGGTAGA ACTGCAGGAA GCCCATGACC AACTGGTGCT GTACCTGAAT
CGCTGGGTCG GTGCCGAGTT GCAGGAGGGT CGACGCGCCG CCCGCAGGTT GACGGCCGAT
AGCATCCTGC GAGCCTGGCG ACTGCAGGGC GAGCCTGGTT CGGCCGGCGA GGGGCAAACA
CAAGGGCAGC GCTTGTCGAT GAGCGGTTTG AGTTTGCGCA CACTGCCGGC ACTGCCGCCG
AACATCGATT TCCATCGTAT TACCCTGCTG AGCGTGAACG ACACCCGGAT TACTGACATA
CCGGTCGACT TCCTTCGCCC CTTCACTGCC CTGACGCACC TGAACCTCAA CAACAACGCG
TTGATGCGTC TACCAACAGG CATTGCCCAT TTACCGAATC TTCAATCGCT TCGGTTGGCG
CATAACGAGA TACGCCTCGA TGCCCAGGCG ATCGGCGTTT TGCATGGTTT GTCCAACCTT
GCGCATCTTG ATCTCAGCCA TAACCGGCTG GAAGCGCTGG ACATGAGCTT TCATCAACTT
TCTCGGCTGA CTAGCCTGAA CCTGCGTCAT TGTCGCCTGG GCAGTTGGCC GCGTCGCCTG
GAGCTCTGTG GTCTACTCGA GTGTGCTGAC CTGCGCAACA ATCAACTCCG CGAAGTGCCC
ACCGAGATCC AGCTGATGCC TTATGCATTT CGACGCGCCA TTCTGATAGA AAACAACCCC
TTGTCGGTCA TGCAGCAAAG AGGGTTGTAT GCACTCGATG TGATCGAAGA GCACCGGCAC
TCACCTGAGC AGTTGGGGTC AGTTGACCTG GTCAGGGCCC GTACGCGTTG GGTAGGCCAT
ACGGATGCGA CGGTTCAGGC CGAGCGGGAG GACGTGTGGC TGCGGTTGCT GGAGCAAGCG
GGTAGCAGCG GGTTGTTCAG GTTGTTGGCT CGCCTGGAGA TGACAGCGGA CTACAGCGAA
GCGGGTGAAG GGCGGGATGC GCTGGTTGAC GGCGTATGGA CACTGCTGGC TACGCTGGAC
GGCGACCCGG TGCTGTGCCG GCGGATCTTT GAGCAGGCCG GCCTGCCACT GTCATGTTCG
GACGCCGTTG CCAGTCACTT CAGTGCACTG CAAGTATCGC TGAGGCAGGC GCAGGCAGAA
ACCGCCGCAG CCAACCCTGA AAGCAGGGGT GAGTTGCTCG AACTGGGTAG GCAACTGTTC
CGGCTGGATC AACTGGAAGG GATTGCCTAC CAGGATGGCC GGCAGCGTCT GGCTGCCAGT
GAACATATTG ACCAGTTGGC ATTGGGGCTG GCTTACAGGG TGCAACTTCG TAGCCGGTTG
CAGCTGCCCA ACCAGCCATA TGCCATGCGC TATCCCGAAG CTGTCGCGCT GACACAGGCC
CAGATAGAGG ATGCGTTCCT GCGGGTTACG CGCGCGCAGA CCATCGAGGG CCTGACCGAT
AGCCTGAGCC AGCGCGCGTT CTGGCGACGT TACCTGCGCC AGCAACATGA CCAGATGTTC
GATGCCCTCA GTGCGGACTA CACGCGACGC ACGCTTGAGC TGCAGGCTCA ACGTCCTGCC
TTGGCGCCGG CGGCCTTCGA GCAGCAACTA CACGGGCTGC AGGCACAGCA GGACCTCGAC
ATCGAGCGCC TGGTCGCAGG GCTCACCCAG TCCTACCTGC GTGCAGCCGA GCGCGCAGAG
GGGTGA
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| Protein sequence | MIINTTGHDP FIGARLPEWL KRASRGQINT LRTSLNAHHA SQARLSGLTL ELLPLQQFAE
KHLAALLDAP LPDGQVFAQL EWLRVAPRFG TLPGTLQQTY GYSQTRENGL LRLMRNFAAN
TRYYEGTGLV LPGSDKPLNA SLEALITACR NLDVGQRYQD ALQRIFPPAT QAVLAEDKRS
GLKLATELAA LQGNISVDVQ LALRELVDHG QERRQRGLEG KPMLLRALGK PVVDGLLIHL
HDKAGNDRGI VLYLPGDPRQ ALRFFDNAAS MNSTVAMLLP DPGYWQYFTQ LISLEHRAGF
VSTLGKRLKD KLPDLELEGE TPEGGIFTQL ATRQVQRAKE DARLLLVPTA DADSLAVSAR
HAEWKAAGLD LVNLAGLFIP AVGGVLLGQV VAQTCAEVFE GTRDWSRGHQ HEALQHLLGV
AETLAATAAT VAGVSFVRSA FVAGLEPVSL GNGRGRLWQF NARNYRSLPG AIDLFEEGRY
GEVGRRWVRI DGRNFEVHQP IADGPYRLRH VASEGGYGPV VLHNGERGWQ LMREQPLSWQ
APARMLDALW PQHSPVDAHQ AEQIMRVAGI DADLLRGVLV ENRPAPVSLG QTLRAFQAHA
RIQTFFERVR LKALVPSDSE LLAWCEARPD VGAGLEQIRV HEAGLRPQLF AHLTEQPLAA
DPLSMLVKRD FPGLPSAYIN EVTDQAHELE HQMARVERRL PLPCANNARS LLRLARLSRG
LAGLYLSTAY SDVTGELALA LLDSFELEHL DLDLRDSGLD GRSIRRLGSG GQTEARRIVV
RHEGRFLIYN GSGVPHVLIA DEPGCIFEAL FAALTSEQRA AMQRVGSAAA SQLREKLLAR
LPASHWDIAR MLGWPEEQAW LNPGRRMDDG RVGYPLSGRP GAAPRDERAI IRDQLRSLYP
GLDEAALDVE LARVQQGPQP VFERLVELQE AHDQLVLYLN RWVGAELQEG RRAARRLTAD
SILRAWRLQG EPGSAGEGQT QGQRLSMSGL SLRTLPALPP NIDFHRITLL SVNDTRITDI
PVDFLRPFTA LTHLNLNNNA LMRLPTGIAH LPNLQSLRLA HNEIRLDAQA IGVLHGLSNL
AHLDLSHNRL EALDMSFHQL SRLTSLNLRH CRLGSWPRRL ELCGLLECAD LRNNQLREVP
TEIQLMPYAF RRAILIENNP LSVMQQRGLY ALDVIEEHRH SPEQLGSVDL VRARTRWVGH
TDATVQAERE DVWLRLLEQA GSSGLFRLLA RLEMTADYSE AGEGRDALVD GVWTLLATLD
GDPVLCRRIF EQAGLPLSCS DAVASHFSAL QVSLRQAQAE TAAANPESRG ELLELGRQLF
RLDQLEGIAY QDGRQRLAAS EHIDQLALGL AYRVQLRSRL QLPNQPYAMR YPEAVALTQA
QIEDAFLRVT RAQTIEGLTD SLSQRAFWRR YLRQQHDQMF DALSADYTRR TLELQAQRPA
LAPAAFEQQL HGLQAQQDLD IERLVAGLTQ SYLRAAERAE G
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