| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3519 |
|---|
| Symbol | |
|---|
| ID | 5192607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3931883 |
|---|
| End bp | 3932347 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640587976 |
|---|
| Product | TraR/DksA family transcriptional regulator |
|---|
| Protein accession | YP_001268829 |
|---|
| Protein GI | 148548727 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1734] DnaK suppressor protein |
|---|
| TIGRFAM ID | [TIGR02420] RNA polymerase-binding protein DksA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.370686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0696704 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATAGGC ATCGACGGCA CATGAATCGC CCAAATGCAC ATTTTTTCAT AGAGAAATCG
ATGACCAAGG AACAGTTGCT GGCCATGTCG GCCGATGACT ACATGAACGC CGACCAGCTT
GCCTTCTTTA CTGAGCTGCT GCAGGCGATG AAAGTCGAAA CCCATGAACG CATCGAACTC
AGCCGCACCA CCATCGAAGG CCTGGACACC CCGTCAGACC CCGCCGACGT GGCTTCGGTC
GAAGAAGAAC GTAGCTGGCT GGTAAATGCC ATCGACCGCG ACCAGCGCCT GCTGCCACAG
CTGGAAATGG CCCTGGACCG TATTGCCGAC GAAAGCTTCG GCTGGTGCGA TGACAGTGGT
GAGCCCATCG GCCTGAAGCG CTTGCTGATC AGCCCGACCA CCAAATACTG CATCGAAGCC
CAGGAGCGCC ACGAGCAGCT CGACCGCCAC CAGCGTCAGG TATAA
|
|---|
| Protein sequence | MHRHRRHMNR PNAHFFIEKS MTKEQLLAMS ADDYMNADQL AFFTELLQAM KVETHERIEL
SRTTIEGLDT PSDPADVASV EEERSWLVNA IDRDQRLLPQ LEMALDRIAD ESFGWCDDSG
EPIGLKRLLI SPTTKYCIEA QERHEQLDRH QRQV
|
|---|
| |