| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3480 |
|---|
| Symbol | |
|---|
| ID | 5195036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3886922 |
|---|
| End bp | 3888610 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640587932 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001268790 |
|---|
| Protein GI | 148548688 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.629722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.285223 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGATA ACTATCGCGC GGCCGTGGAC GCGGCCGCAA TCTTTTCGGA AACCGACCTG
CGTGGGAACA TCACCTACGT CAATCAGCAG TTCTGCAGCA TCTCGGGCTA CAGCCGTGAA
GAACTGTTGG GGGCCAACCA CCGCATCCTC AATTCCGGGC TGCATGAACC GACGTTCTTT
GTCGGCATGT GGCGGGCTTT GGTCGCCGGG CGGGTGTGGA AGGGCGAAAT CTGCAACCGG
TCCAAGGACG GTTCGTTGTA CTGGGTCGAC AGCACCATGG TGCCACTGGT CGATCCGCTG
ACAGGCCAGG TGCGCAAGTA TGTGTCGATC CGCTTTGACG TCACGGAGAA GCGCCAGCTG
CTGCATACCT TGCAGTGGCG GGTGGGCCAC GATGTGCTCA CCGGCCTGCC TAACCGCGCC
TACCTGTCCG ACCTGCTGAA CCAGGCCCTG GCCTACTCGC GCCGCGAAGG CATCTCGCTG
GCGGTGTGCA TGCTCGACCT GGATGGTTTC AAGGCGGTCA ACGACGGCTA CGGGCATGCC
GTGGGTGACC TGCTGCTGGT GGAAGTGGCG CAGCGCCTGA AGAGTATCCT GCGTGGTGGG
GATGCCGTGG CGCGGCTGTC GGGCGACGAA TTCGTGCTGA TCCTGCGCGA TGTTGATGAT
GAACACCAGC TGCATGCAGC CCTGCAGCGG GTATTGCGTG CCTTGGCGGC GCCCTGTGTG
GTGCGTGAGC ATACACTGTC GCTCAGCGCC AGTATCGGCG TGACCCTGTA CCCGCAGGAT
GACGAAGATG CCGACACCCT GGTGCGCCAC GCCGACCAGG CCATGTATGT GGCCAAGCAG
CGCGGGCGCA ACCGTTACCA CCTGTTCGAC GTGTCGCAGG AACAGGAGCT CAAGGCCACC
CACCAGACCG TGGCGCGCGT GCGCCGGGCG CTGCGCAACG GTGAGCTGTG TCTTTACTAC
CAGCCCAAGG TCAACCTGCG CAGTGGCAAG GTACTGGGCT TCGAGGGCTT ATTGCGCTGG
CAGCGGCCAG GCCGTGGTGT GGTGCCGCCA GGCGATTTCC TGCCCTGGGT AGAGCAGACC
GACCTGATCG TCGAAATCGG CGAGTGGGTG ATCGGGCAGG CGTTGAGCCA GTTGCAGGCC
TGGCAGCGCC AAGGGCAGCC CTGGTCGCTG AGCGTGAATA TTGCCGCGCG GCATTTGCAG
CGCAATGACT TTGCCGAACG CCTGCAGCAG TTGCTGGCAG CGTACCCGGC GGTGGACCCG
GTGCTGCTGG ACCTGGAAAT CGTCGAGTCA GTGGCCATCG ACAACCTGCA GCATGTCAGC
CGCTGCCTGG ATGCCTGCCG TGCGTTGGGT GTGCGTTTCT CGCTGGACGA TTTCGGCACC
GGTTATTCGT CCTTGAGTTA CCTGAAACGC TTGCCGACCC AGACGATCAA GATCGACCAG
TCGTTCGTGC GTGACATCCT TCATGACCAG GACGACCTGG CGCTGACGGA GGCGGTGATC
GGCCTGGCGC GGGCGTTTGG CCGCGAGGTG ATTGCCGAGG GGCTGGAGAG TGTCGAGCAC
GGTCGGGTAC TGATGGGCCT GGGCTGCGAG CTGGCGCAGG GTTACTGCAT CGCCCGGCCG
ATGCCCGCCA GTGACGTGCA AGCCTGGGCA CAGGCCTACC GGCAGCCAGT GCAGTGGCGT
GACCCTTGA
|
|---|
| Protein sequence | MDDNYRAAVD AAAIFSETDL RGNITYVNQQ FCSISGYSRE ELLGANHRIL NSGLHEPTFF
VGMWRALVAG RVWKGEICNR SKDGSLYWVD STMVPLVDPL TGQVRKYVSI RFDVTEKRQL
LHTLQWRVGH DVLTGLPNRA YLSDLLNQAL AYSRREGISL AVCMLDLDGF KAVNDGYGHA
VGDLLLVEVA QRLKSILRGG DAVARLSGDE FVLILRDVDD EHQLHAALQR VLRALAAPCV
VREHTLSLSA SIGVTLYPQD DEDADTLVRH ADQAMYVAKQ RGRNRYHLFD VSQEQELKAT
HQTVARVRRA LRNGELCLYY QPKVNLRSGK VLGFEGLLRW QRPGRGVVPP GDFLPWVEQT
DLIVEIGEWV IGQALSQLQA WQRQGQPWSL SVNIAARHLQ RNDFAERLQQ LLAAYPAVDP
VLLDLEIVES VAIDNLQHVS RCLDACRALG VRFSLDDFGT GYSSLSYLKR LPTQTIKIDQ
SFVRDILHDQ DDLALTEAVI GLARAFGREV IAEGLESVEH GRVLMGLGCE LAQGYCIARP
MPASDVQAWA QAYRQPVQWR DP
|
|---|
| |