| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3479 |
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| Symbol | |
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| ID | 5195035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3885068 |
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| End bp | 3886816 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640587931 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001268789 |
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| Protein GI | 148548687 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.496385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.125904 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCAT CCGCTTCGAC CCACACCCGC CTGATCCAGG CTTCCTGGGA CCGCTGCCGC
GACCACGGCC TGCAGCCGCA GCATGCGCCG GACTTTGACT GCCTGTCCTG CGCCGAGCTC
AGCGCCCTGC TGGAGCGGCG CCAAAACCTG CTACGCCTGA CCCGCGAGGA AGTGCTACCG
CACTATGCGC ACCTCTTGGG TAACGCCAGC TACCTGGTGA TGCTGGCCGA TGCCAGCGGC
TGCCTGCTCG ACAGCTGGGG CTCGCGGCGT TTCATCGAAC CGCGCCAGCA CCATGGTTTC
AGCGCCGGCG CCCATTGGCA CGAACGTGGC GTCGGCACCA ATGCCCTGGG CACCACACTG
ATTTGCGCCG AAGCGATTCA CGTCGGCCAG GACGAACACT TCCTGCGCCA GAACCGCTAC
ATGTCCAGCG CCGCCGCCCC CCTGTTCGAC GCCGCACGGC AGCTGGTCGG GGTGCTCGAC
GTAGCCAGCG ACGGCTACCT GCCGGCCAGC CAGACGCTTG GGCTGGTGCG CATGATGGGC
CAGAGCCTGG AAAACCGCCT GATCCTCGCC GAACATGCTG ACCAGCATGC ACAACTGATC
TTCAACAGCG CCTCCGACAA TCTCGACAGC CCTTGGGCCG GCCTGCTGGT GTTCGATGAG
CGCGGACAGG TGTTGGCTGC CAATCACCGG GCCGATAGCC TGCTCGGCGT AAACCCGCTG
CAGCAAAACA TCGAGCAACT GTTCCAGTTA CCCCTGCAAC AGCTGCTCAG CCATCCCCGA
CAGCAGCCCT TCGCTCTGCA GGCCACCGGG CGCAACCGCT TTCACTGCCA GTGGCACCCC
CCACGCGAAA CCATTCGACG CCCCGAAGCC GGCAACGCCG AGCCGCGCCT GGAAAAAGCC
TTGAAACAAG CCGGCCTGCT ATTGGAGAAG GACATCCCGG TGTTGGTGGA GGGCGAAACA
GGCGTAGGCA AAGAAGTGTT CGTCGACACC CTGCACCGGG CCAGCAGCCG CGCCAGGCAG
CCGCTGGTTG CCGTAAACTG TGCGGCGATC CCGGCCGAAC TGGTGGAGTC GGAACTGTTC
GGCTATGACA AAGGCGCGTT CACCGGCGCC CACCACAAGG GCAACCCGGG GCTGATCCGC
AAGGCCGACC ACGGCATCCT GTTTCTGGAT GAGATTGGCG ACATGCCACT GCCCACCCAG
GCCCGCCTGC TGCGCGTACT GCAGTCGCGC AGCATCCAGC CGCTGGGCAG TGGCGAACCG
GTGCCGGTGG ATATCCGCGT GGTGTCGGCG AGCAATCGCA ACCTGGCCGA AGAAGTGCGC
GCCGGGCGCT TTCGCCAGGA CCTGTACTAC CGCATCGCCG GCCTGACACT GGTGCTGCCT
CCCCTGCGCC AACGCGCTGA CCGGCGCCAG CTGATTGAGC AGGTGCATGC CCGCTACCGC
GAGCCCGGGC AACCTGCGCG GCTGCCCCCG GCCATAATCG ACCTGTTCGA TCAACACCCC
TGGCCGGGCA ACCTGCGCGA ACTGGTGAGT GTGCTACAGG TCGCGTTGGC CCTGGCGGCC
AACGGACCGG TCGGCGTCGA GCACCTTCCA GCGGGTTTTC TGGCCGAGTC GAAAACACCG
GTGCCGATAG CGACTGAAGA GACGGACCTG CAGAGCCTGG TCGAGCAAGC CAATGGCAAC
CTGTCGGCGG TAGCCCGCCG ACTGGGTATC AGCCGTACCA CACTGTACAA GCGGTTGCGT
GAGCGATGA
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| Protein sequence | MAASASTHTR LIQASWDRCR DHGLQPQHAP DFDCLSCAEL SALLERRQNL LRLTREEVLP
HYAHLLGNAS YLVMLADASG CLLDSWGSRR FIEPRQHHGF SAGAHWHERG VGTNALGTTL
ICAEAIHVGQ DEHFLRQNRY MSSAAAPLFD AARQLVGVLD VASDGYLPAS QTLGLVRMMG
QSLENRLILA EHADQHAQLI FNSASDNLDS PWAGLLVFDE RGQVLAANHR ADSLLGVNPL
QQNIEQLFQL PLQQLLSHPR QQPFALQATG RNRFHCQWHP PRETIRRPEA GNAEPRLEKA
LKQAGLLLEK DIPVLVEGET GVGKEVFVDT LHRASSRARQ PLVAVNCAAI PAELVESELF
GYDKGAFTGA HHKGNPGLIR KADHGILFLD EIGDMPLPTQ ARLLRVLQSR SIQPLGSGEP
VPVDIRVVSA SNRNLAEEVR AGRFRQDLYY RIAGLTLVLP PLRQRADRRQ LIEQVHARYR
EPGQPARLPP AIIDLFDQHP WPGNLRELVS VLQVALALAA NGPVGVEHLP AGFLAESKTP
VPIATEETDL QSLVEQANGN LSAVARRLGI SRTTLYKRLR ER
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