| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3473 |
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| Symbol | |
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| ID | 5193649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3878922 |
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| End bp | 3880661 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640587925 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001268783 |
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| Protein GI | 148548681 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.971584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00076059 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCGACA ACAAACACAA CAGGCGACAT TTGACCCTGG CCGCGTTGCT GGTACTGGCC
AGCGTGCAAG GCACAGCCTG GGCCGACCAG TACGAAGAGG CGGCAAAGAA ATGGATCGGC
AGCGAGTTCA AGCCTTCGAC CCTTACCCCC GAACAGCAGT TGGCCGAATT GCAGTGGTTC
ATCAAAGCAG CCGAGCCGTT TCGCGGGATG AAGATCAACG TTGTGTCGGA AACCATCACC
ACCCATGAAT ACGAGTCCAA GGTGCTGGCC AAGGCTTTCA GTGAGATCAC CGGCATCCAG
TTGACCCACG ACCTGCTGCA GGAAGGCGAT GTGGTGGAAA AACTGCAGAC GCAGATGCAG
TCGGACAAGA ACATCTATGA CGGCTGGGTC AACGACTCCG ACCTGATCGG TACGCACTTT
CGCTACGGCA AAGTGGAATC GATCACCGAC CTGATGGCCA ACGAGGGCAA AGCCTACACC
TCGCCGACCC TCGACCTGAA GGACTTCATC GGTATTTCCT TCACCACCGC GCCCGATGGC
AAGGTCTACC AACTGCCCGA CCAGCAGTTC GCCAACCTGT ACTGGTTCCG CGCCGACTGG
TTCGAACGGC CTGAGTTGAA GGCCAGGTTC AAAGAGAAGT ACGGCTATGA ACTGGGAGTG
CCAGTGAACT GGTCGGCGTA CGAGGACATT GCCAAGTTCT TCACCGAAGA CGTCAAGGAG
ATCGACGGCA AGCGTGTCTA CGGGCACATG GACTACGGAA AGAAAGACCC GTCACTGGGC
TGGCGCTTCA CCGATGCCTG GTTCTCGATG GCCGGCGGCG GCGACAAAGG CCTGCCCAAT
GGTTTGCCGG TCGATGAATG GGGCATTCGC GTGGAGGACT GCCATCCGGT GGGTTCCAGT
GTGACCCGCG GCGGCGATAC CAATGGGCCG GCCGCCGTCT ATGCCACGCA GAAGTACGTG
GACTGGATGC GTGCCTACGC GCCCAAGGAA GCGCAGGGCA TGACATTCTC CGAAGCCGGC
CCTGTGCCGG CGCAAGGCAA CATTGCCCAG CAGATATTCT GGTACACCGC GTTCACCGCC
GACATGACGA AGCCCGGCTT GCCGGTTGTG AATGCCGACG GCACGCCGAA GTGGCGCATG
GCGCCTTCAC CGAAGGGGCC ATACTGGGAA GAGGGTATGA AACTCGGCTA CCAGGACACC
GGCTCGTGGA CCTTCTTCAA GTCCACCCCC GAGAAGCAAC GCTTGGCGGC GTGGCTGTAC
GCCCAGTTCG TCACCTCAAA GACCGTATCG CTGAAAAAGA CCATCGTCGG CCTGACGCCG
ATTCGTGAGT CGGACATCAA CTCCCAGGCC ATGACCGAGT TGGCGCCCAA GCTCGGTGGG
CTGGTGGAGT TCTATCGCAG CCCTGCGCGG GTGCAGTGGA CGCCGACCGG CACCAACGTG
CCGGACTACC CGCGGTTGGC GCAATTGTGG TGGAGCCATA TCGCCGAAGT CGCCAGTGGC
GAAAAGACCC CGCAGGAAGC CCTGGATGGG CTGGCCCGCG ACCAGGACCG CATGATGGAG
CGCCTGCAAC GCTCCAATGC CCAGGCGACG TGTGCACCCA AGCTGAATCC GGAGAAGGAC
GCCCAGTACT GGTTCGACCA GCCGGGTGCG CCGAAAGCCA AGCTGGCCAA CGAAAAGCCC
ATGGGCGAGA CCGTCAGCTA CAACGAACTG CTGAAGTCTT GGGAGGCGGC CAGGAAGTGA
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| Protein sequence | MFDNKHNRRH LTLAALLVLA SVQGTAWADQ YEEAAKKWIG SEFKPSTLTP EQQLAELQWF
IKAAEPFRGM KINVVSETIT THEYESKVLA KAFSEITGIQ LTHDLLQEGD VVEKLQTQMQ
SDKNIYDGWV NDSDLIGTHF RYGKVESITD LMANEGKAYT SPTLDLKDFI GISFTTAPDG
KVYQLPDQQF ANLYWFRADW FERPELKARF KEKYGYELGV PVNWSAYEDI AKFFTEDVKE
IDGKRVYGHM DYGKKDPSLG WRFTDAWFSM AGGGDKGLPN GLPVDEWGIR VEDCHPVGSS
VTRGGDTNGP AAVYATQKYV DWMRAYAPKE AQGMTFSEAG PVPAQGNIAQ QIFWYTAFTA
DMTKPGLPVV NADGTPKWRM APSPKGPYWE EGMKLGYQDT GSWTFFKSTP EKQRLAAWLY
AQFVTSKTVS LKKTIVGLTP IRESDINSQA MTELAPKLGG LVEFYRSPAR VQWTPTGTNV
PDYPRLAQLW WSHIAEVASG EKTPQEALDG LARDQDRMME RLQRSNAQAT CAPKLNPEKD
AQYWFDQPGA PKAKLANEKP MGETVSYNEL LKSWEAARK
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