| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3464 |
|---|
| Symbol | |
|---|
| ID | 5192134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3866841 |
|---|
| End bp | 3867881 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640587912 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001268774 |
|---|
| Protein GI | 148548672 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000102358 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAC GTGTGGCACT GGTACTGGGA TCGGGCGGCG CCCGAGGGTA TGCGCACATC
GGCGTGATTG AGGAAATCGA GCGCCGCGGC TACGACATAG CCTGCGTCGC AGGGTGTTCC
ATGGGCGCGG TGATTGGCGG TATCTATGCC GCCGGCAAGC TGGACGAGTA TCGCAACTGG
ATCGAAAGCC TCGACTACCT GGATGTGCTG CGCCTGGTCG ACGTCAGCTT TCGCCTCGGT
GCGATTCGCG GCGACAAGGT GTTCGGGCAG ATCCGCAAGA TCGTCGGCGA GATAAACATC
GAGCAACTGC GCATACCCTA CACCGCAGTG GCCGCCGACC TTACCAACCA GCAGGAAATC
TGGTTCCAGG AGGGTTGCCT GCATCAGGCC ATGCGCGCCT CAGCGGCCAT TCCCAGCCTG
TTCACGCCAG TGATGCAAGG CAACCGCATG CTTGTCGACG GTGGCATCCT CAACCCGCTG
CCAATCGTGC CGGTGGTGTC CAGCCATTGC GACCTGATCA TCGCGGTCAA CCTCAACGCC
ACCAACCAGA AGCAGTACCA GTTGCCGGTG ATCGAGCGCC CGGCGGCATT CAAGATGCGC
TTTGACGCCT TGTTGAGCTC GCTGGGTTCA CGCTTGCCAT TCCGGCGCAA ACCGGCGGAA
GAGCTGATCC GCATCGAAAA GGAAATCGTC GCCGAGGGGT TGGCACCGCC AAGCCCGTGG
CTTGCCGACA GCGCCGACCC GGAAAACCAG CAACCGGCAG CGGCCCCGGA GCGCGAGGGC
GCACCGAAGT CGGCCACCGG CTCTTTCATC ATCGACAACG TGGGGCCAGC CTCGCTGTTG
GACTTGATCA ACCAGAGCTT CGAGGTCATG CAGACTTCGT TGGCACAGTA CAAGATTGCC
GGCTATCCAC CGGATGTGCT GATCAACGTG CCCAAGCGGG TGTGCCGGTT TTTCGAGTTC
TACAAAGCGC CGGAGCTCAT CGCCCTGGGG CGAGAGATTG CACGCGATAC GCTGGACAGT
TATGAAGGGG TGAAGCGGTA G
|
|---|
| Protein sequence | MSKRVALVLG SGGARGYAHI GVIEEIERRG YDIACVAGCS MGAVIGGIYA AGKLDEYRNW
IESLDYLDVL RLVDVSFRLG AIRGDKVFGQ IRKIVGEINI EQLRIPYTAV AADLTNQQEI
WFQEGCLHQA MRASAAIPSL FTPVMQGNRM LVDGGILNPL PIVPVVSSHC DLIIAVNLNA
TNQKQYQLPV IERPAAFKMR FDALLSSLGS RLPFRRKPAE ELIRIEKEIV AEGLAPPSPW
LADSADPENQ QPAAAPEREG APKSATGSFI IDNVGPASLL DLINQSFEVM QTSLAQYKIA
GYPPDVLINV PKRVCRFFEF YKAPELIALG REIARDTLDS YEGVKR
|
|---|
| |