| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3460 |
|---|
| Symbol | |
|---|
| ID | 5193223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3864307 |
|---|
| End bp | 3864675 |
|---|
| Gene Length | 369 bp |
|---|
| Protein Length | 122 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640587908 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001268770 |
|---|
| Protein GI | 148548668 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3728] Phage terminase, small subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000262407 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAC GCCTGCCCAA TCTTCCCGCC TGGCAATGGC GCGGCTACCA CCATAATCAC
CGCCACCCGG CCAACCTGGT GCTGCACCTG ATTGCTGTGC CGTTGTTCAT TCTAGGGACA
CTACTGGTGC TGTCCGGCCT GTTCGGTTTC GACCTCGGCC AGATCGCGGT GGGTGTGATT
GCCCTGGTCG CCGCGCTGGG CCTGCAGCGC CAAGGCCACC GCCTTGAAGC CCAGCAGCCC
GAGCCGTTCG CCAACCGCCA GGATGCCGTG CAACGCTTAC TGACCGAGCA GTTCATCACC
TTTCCGCGCT TTGTGGTGAG CGGGGCCTGG TGGAGGGCCT GGCGCGAACG GCACAAGCAC
CGACACTGA
|
|---|
| Protein sequence | MSKRLPNLPA WQWRGYHHNH RHPANLVLHL IAVPLFILGT LLVLSGLFGF DLGQIAVGVI
ALVAALGLQR QGHRLEAQQP EPFANRQDAV QRLLTEQFIT FPRFVVSGAW WRAWRERHKH
RH
|
|---|
| |