| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3457 |
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| Symbol | |
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| ID | 5192984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3860264 |
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| End bp | 3861706 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640587905 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001268767 |
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| Protein GI | 148548665 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.593202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000121257 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATGCCG CTCACCGACC ACGGACACGT TTTCGCATGC AGCGATGCTG GCTCATTTTT
CTGCTGACGT TGGGGTTGAT CTTTACCGGC CCCGCCCAGG CGCGCTCGCC GGGCCCACAG
CAGCACATAC CGCCTGCCAA GGTGCGTGAC CTGCCGCAGA TTCGTACCAG CAAAGTACTG
AAAGTGCTGG TCAACCAGAG CCGCAACAGT TCCGGTGAGG TCAAGGGCGA GCCAGTCGGC
ATTGAGTATT ATCGCCTGCG TGCCCTGGAG CATTTCCTCA ATGCTCGTAC TGCCGACGAC
CAGCAGATCC AGCTAAAGCT CATCCCGCGG GCCAAGGAAC AGTTGCTGGG CGCCCTGGCC
CGCGGCGAGG GTGACCTGGC CGCGCCAGGC GAGCTGCTTG ACCCCACTAC GGTGAATGGT
GTTCGTAGCA GCGCGCCGAT ACTCGACCAA GTGCCGCTGA TGCTGGTCGG GCGCAAAGGC
GAGCGAAGTT TCAGCAAGGT CGAACAGCTG TCAGGGCGTA CCGTGGCGTT GACCAGCGCC
AGTGCCGCCG GACCATTGAT CCAGCAGGTC AACCAGCAAC TGGCACTGCG CAAGCGGCCG
CCGATCAAAG TGGAGTGGGT CGATTCGACG CTGGCGGTGG AGGATGTGCT GGAGATGGTA
CAGGCAGGCA TCTACCACCT GACCGTGGTC GAGCAGCCCA TTGCCCGGCG TTGGGCCCGG
GTTATGCCGC GCCTGCGCCT GGACAGCCGG GTGCGCCTGG GTGCGCCGCA AGCCATGCGC
TGGTATGTCG GGCGTGATGC CCCGCAATTG TTGGCCGCAG TTGATCACTT TCTGCAAGGC
TACCGCGCGC CAGATAACCA GGATGCGGCG TTCGAGCGCA TCTACCGCCG CCAGTACCGG
GTACACAACC CGTTGGCCAG CAAGGACCGC CAGCGTCTGG CATCGGTACG GGCGGTGTTG
CAGAAGCATG GCCAGGCGCA ACAGATCGAC TGGCTCAACC TGGCTGCGCT GGCCTTCAAG
GAGTCGACGC TCAATCCGGC TGCACGCGGT ACTGGCGGTG CCCATGGCCT GATGCAGATT
ACCCCTTCGG CGGCCCAGCG GGTGGGGGTG AGCAACACTG CAACGGTAGA TGGCAATGTC
CTGGCCAGTG CCCGTTACCT GGCGCTTATC CGGCGCAAGT TTTTTGCCAG TGCCAAGATC
AACGAGCGTG AGCGCATGGC CTTTGTGCTG GCAGCCTACA ACCTCGGCCC CGAGCGGGTT
CAGGCCATGC GCGCAGAGGC TCGACGGCGA GGTCTAAACG GTAACCAGTG GTTCTTCCAG
ACCGAACGTA TCGCCATGGA GCAAGTGGGG ATGGGACCGG TCAATTTCGT CAATAGCATC
AACAAGTACT ACCTGGCCTT CAACCGCGAA CGCGCGGCAC TGGAGCGCGT GGCGAAGCGT
TAA
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| Protein sequence | MDAAHRPRTR FRMQRCWLIF LLTLGLIFTG PAQARSPGPQ QHIPPAKVRD LPQIRTSKVL
KVLVNQSRNS SGEVKGEPVG IEYYRLRALE HFLNARTADD QQIQLKLIPR AKEQLLGALA
RGEGDLAAPG ELLDPTTVNG VRSSAPILDQ VPLMLVGRKG ERSFSKVEQL SGRTVALTSA
SAAGPLIQQV NQQLALRKRP PIKVEWVDST LAVEDVLEMV QAGIYHLTVV EQPIARRWAR
VMPRLRLDSR VRLGAPQAMR WYVGRDAPQL LAAVDHFLQG YRAPDNQDAA FERIYRRQYR
VHNPLASKDR QRLASVRAVL QKHGQAQQID WLNLAALAFK ESTLNPAARG TGGAHGLMQI
TPSAAQRVGV SNTATVDGNV LASARYLALI RRKFFASAKI NERERMAFVL AAYNLGPERV
QAMRAEARRR GLNGNQWFFQ TERIAMEQVG MGPVNFVNSI NKYYLAFNRE RAALERVAKR
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